Volume 11 Supplement 1

Beyond the Genome: The true gene count, human evolution and disease genomics

Meeting abstracts

Beyond the Genome: The true gene count, human evolution and disease genomics.

Boston, MA, USA11-13 October 2010

Page 2 of 2

L-Systems: a mathematical paradigm for designing full length human genes and genomes

Authors: Arunava Goswami, Pabitra Pal Choudhury, Amita Pal, R L Brahmachary and Sk Sarif Hassan

Citation: Genome Biology 2010 11(Suppl 1):P15

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
The A V E S T A G E N O M E project™ - a discovery model for disease genomics and beyond

Authors: S N Guzder, Renuka Jain, Naveen Sharma, Chellappa Gopalkrishnan, Yasmin Shah and Villoo Morawala-Patell

Citation: Genome Biology 2010 11(Suppl 1):P16

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing

Authors: Mohamed Helmy, Naoyuki Sugiyama, Masaru Tomita and Yasushi Ishihama

Citation: Genome Biology 2010 11(Suppl 1):P17

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Sensitive population profiling and genome assembly of HIV and Flaviviruses using ultra-deep sequencing technologies

Authors: Matthew R Henn, Niall J Lennon, Ruchi Newman, Patrick Charlebois, Christian Boutwell, Molly OhAinle, Aaron Berlin, Elizabeth Ryan, Christine Malboeuf, Alex Macalalad, Monica Casali, Rachel Erlich, Henry Bigelow, Lisa Green, Sante Gnerre, Sarah Young…

Citation: Genome Biology 2010 11(Suppl 1):P18

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Profiling post-translational modifications of proteins that regulate gene expression

Authors: Peter Hornbeck, Ela Skrzypek, Bin Zhang, Jon Kornhauser, Sasha Tkachev, Beth Murray and Vaughan Latham

Citation: Genome Biology 2010 11(Suppl 1):P19

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Evolution of haplotypes at CCL3L1/CCL4L1

Authors: Somwang Janyakhantikul, Danielle Carpenter and John AL Armour

Citation: Genome Biology 2010 11(Suppl 1):P20

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Moonlighting proteins

Authors: Constance Jeffery

Citation: Genome Biology 2010 11(Suppl 1):P21

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
A candidate subspecies discrimination system involving a vomeronasal receptor gene with different alleles fixed in M. m. domesticus and M. m. musculus

Authors: Robert C Karn, Janet M Young and Christina M Laukaitis

Citation: Genome Biology 2010 11(Suppl 1):P22

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
CDCOCA: a statistical method to define complexity dependent co-occurring chromosomal aberrations

Authors: Nitin Kumar, Hubert Rehrauer, Haoyang Ca and Michael Baudis

Citation: Genome Biology 2010 11(Suppl 1):P23

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Identifying gene copy number variants associated with colorectal adenoma recurrence

Authors: Christina M Laukaitis, Patricia Thompson, Maria Elena Martinez and Eugene W Gerner

Citation: Genome Biology 2010 11(Suppl 1):P24

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis

Authors: Eric Letouzé, Yves Allory, Marc A Bollet, François Radvanyi and Frédéric Guyon

Citation: Genome Biology 2010 11(Suppl 1):P25

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Development and evaluation of RNA-seq methods

Authors: Joshua Levin, Xian Adiconis, Moran Yassour, Dawn Thompson, Mitchell Guttman, Michael Berger, Lin Fan, Nir Friedman, Chad Nusbaum, Andreas Gnirke and Aviv Regev

Citation: Genome Biology 2010 11(Suppl 1):P26

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
MamPhEA: a web tool for mammalian phenotype enrichment analysis

Authors: Meng-Pin Weng and Ben-Yang Liao

Citation: Genome Biology 2010 11(Suppl 1):P27

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Visualization, mapping and sequencing of megabase lengths of DNA

Authors: Kalim Mir, Liqin Dong, David Bauer and Giuseppe Scozzafava

Citation: Genome Biology 2010 11(Suppl 1):P28

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Microarray analysis reveals age-related differences in gene expression during the development of osteoarthritis in mice

Authors: Amy Olex, Richard Loeser, Jeff Chou, Mike Callahan, Cristin Ferguson and Jacquelyn S Fetrow

Citation: Genome Biology 2010 11(Suppl 1):P29

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
DNA barcode profiling: a new platform for the investigation of genome integrity

Authors: M L Pedersen

Citation: Genome Biology 2010 11(Suppl 1):P30

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Transcriptome profiling from formalin-fixed, paraffin-embedded tumor specimens by RNA-seq

Authors: Kunbin Qu, John Morlan, Jim Stephans, Xitong Li, Joffre Baker and Dominick Sinicropi

Citation: Genome Biology 2010 11(Suppl 1):P31

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Comprehensive analysis of the molecular bases of OCA in Indians

Authors: Kunal Ray, Mainak Sengupta, Moumita Chaki, Maitreyee Mondal and Swapan Samanta

Citation: Genome Biology 2010 11(Suppl 1):P32

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
A role for statin therapy in Alzheimer's disease

Authors: David Richards

Citation: Genome Biology 2010 11(Suppl 1):P33

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Genomic alterations in breast cancer patients from Northeast India using 10K SNP arrays

Authors: Sunita Saxena, Mishi Kaushal, Jaganath Sharma, Eric Zomawia and Sujala Kapur

Citation: Genome Biology 2010 11(Suppl 1):P34

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Complete RNA-seq analysis of cancer transcriptomes from FFPE samples

Authors: Shujun Luo, Irina Khrebtukova, Chuck Perou and Gary P Schroth

Citation: Genome Biology 2010 11(Suppl 1):P35

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
The GENCODE human gene set

Authors: S Searle, A Frankish, A Bignell, B Aken, T Derrien, M Diekhans, R Harte, C Howald, F Kokocinski, M Lin, M Tress, M Van Baren, I Barnes, T Hunt, D Carvalho-Silva, C Davidson…

Citation: Genome Biology 2010 11(Suppl 1):P36

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Diverse somatic mutation patterns and pathway alterations in human cancers

Authors: Zhengyan Kan, Bijay S Jaiswal and Somasekar Seshagiri

Citation: Genome Biology 2010 11(Suppl 1):P37

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Balancing selection in the extended MHC region maintains a subset of alleles with opposite risk profile for different autoimmune diseases

Authors: Rachele Cagliani, Stefania Riva, Matteo Fumagalli, Uberto Pozzoli, Giacomo P Comi, Nereo Bresolin, Mario Clerici and Manuela Sironi

Citation: Genome Biology 2010 11(Suppl 1):P38

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Making cancer transcriptome sequencing assays practical for the research and clinical scientist

Authors: Todd M Smith, N Eric Olson and David Smith

Citation: Genome Biology 2010 11(Suppl 1):P39

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Abstract withdrawn

Authors: Jialin Sun

Citation: Genome Biology 2010 11(Suppl 1):P40

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Relating genomic variation to drug response in childhood acute lymphoblastic leukemia by multiplexed targeted sequencing

Authors: Agata Wesolowska, Marlene D Dalgaard, Louise Borst, Laurent Gautier, Mads Bak, Nils Weinhold, Betina F Nielsen, Jacob Nersting, Niels Tommerup, Søren Brunak, Thomas Sicheritz Ponten, Henrik Leffers, Kjeld Schmiegelow and Ramneek Gupta

Citation: Genome Biology 2010 11(Suppl 1):P41

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Metagenomic study of Helicobacter pylori microdissected from archived formalin-fixed paraffin-embedded biopsy sections

Authors: Zongli Zheng, Anders F Andersson, Weimin Ye, Olof Nyrén, Staffan Normark and Lars Engstrand

Citation: Genome Biology 2010 11(Suppl 1):P42

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Evolution of the protein domain repertoire of eukaryotes reveals strong functional patterns

Authors: Christian M Zmasek and Adam Godzik

Citation: Genome Biology 2010 11(Suppl 1):P43

Content type: Poster presentation Published on: 11 October 2010
- View Full Text
- View PDF
Genomic patient information management system

Authors: D Dharmiah, M Narasinga Rao, Ravikiran, N Sandeep, V DS Gopal, Allam Appa Rao and GR Sridhar

Citation: Genome Biology 2010 11(Suppl 1):P44

Content type: Poster presentation Published on: 4 November 2010
- View Full Text
- View PDF

Beyond the Genome: The true gene count, human evolution and disease genomics

Meeting abstracts

L-Systems: a mathematical paradigm for designing full length human genes and genomes

The A V E S T A G E N O M E project™ - a discovery model for disease genomics and beyond

Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing

Sensitive population profiling and genome assembly of HIV and Flaviviruses using ultra-deep sequencing technologies

Profiling post-translational modifications of proteins that regulate gene expression

Evolution of haplotypes at CCL3L1/CCL4L1

Moonlighting proteins

A candidate subspecies discrimination system involving a vomeronasal receptor gene with different alleles fixed in M. m. domesticus and M. m. musculus

CDCOCA: a statistical method to define complexity dependent co-occurring chromosomal aberrations

Identifying gene copy number variants associated with colorectal adenoma recurrence

Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis

Development and evaluation of RNA-seq methods

MamPhEA: a web tool for mammalian phenotype enrichment analysis

Visualization, mapping and sequencing of megabase lengths of DNA

Microarray analysis reveals age-related differences in gene expression during the development of osteoarthritis in mice

DNA barcode profiling: a new platform for the investigation of genome integrity

Transcriptome profiling from formalin-fixed, paraffin-embedded tumor specimens by RNA-seq

Comprehensive analysis of the molecular bases of OCA in Indians

A role for statin therapy in Alzheimer's disease

Genomic alterations in breast cancer patients from Northeast India using 10K SNP arrays

Complete RNA-seq analysis of cancer transcriptomes from FFPE samples

The GENCODE human gene set

Diverse somatic mutation patterns and pathway alterations in human cancers

Balancing selection in the extended MHC region maintains a subset of alleles with opposite risk profile for different autoimmune diseases

Making cancer transcriptome sequencing assays practical for the research and clinical scientist

Abstract withdrawn

Relating genomic variation to drug response in childhood acute lymphoblastic leukemia by multiplexed targeted sequencing

Metagenomic study of Helicobacter pylori microdissected from archived formalin-fixed paraffin-embedded biopsy sections

Evolution of the protein domain repertoire of eukaryotes reveals strong functional patterns

Genomic patient information management system

Annual Journal Metrics

Peer Review Taxonomy

Genome Biology

Contact us