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Special Issue: Long Read Sequencing

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Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M

Authors: Zheng Sun, Shi Huang, Pengfei Zhu, Lam Tzehau, Helen Zhao, Jia Lv, Rongchao Zhang, Lisha Zhou, Qianya Niu, Xiuping Wang, Meng Zhang, Gongchao Jing, Zhenmin Bao, Jiquan Liu, Shi Wang and Jian Xu

Content type: Method

26 January 2022
Comparative assessment of genes driving cancer and somatic evolution in non-cancer tissues: an update of the Network of Cancer Genes (NCG) resource

Authors: Lisa Dressler, Michele Bortolomeazzi, Mohamed Reda Keddar, Hrvoje Misetic, Giulia Sartini, Amelia Acha-Sagredo, Lucia Montorsi, Neshika Wijewardhane, Dimitra Repana, Joel Nulsen, Jacki Goldman, Marc Pollitt, Patrick Davis, Amy Strange, Karen Ambrose and Francesca D. Ciccarelli

Content type: Research

26 January 2022
Open chromatin interaction maps reveal functional regulatory elements and chromatin architecture variations during wheat evolution

Authors: Jingya Yuan, Haojie Sun, Yijin Wang, Lulu Li, Shiting Chen, Wu Jiao, Guanghong Jia, Longfei Wang, Junrong Mao, Zhongfu Ni, Xiue Wang and Qingxin Song

Content type: Research

24 January 2022
IDEAS: individual level differential expression analysis for single-cell RNA-seq data

Authors: Mengqi Zhang, Si Liu, Zhen Miao, Fang Han, Raphael Gottardo and Wei Sun

Content type: Method

24 January 2022
Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples

Authors: Samuel Martin, Darren Heavens, Yuxuan Lan, Samuel Horsfield, Matthew D. Clark and Richard M. Leggett

Content type: Method

24 January 2022

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The Kardashian index: a measure of discrepant social media profile for scientists

Authors: Neil Hall

Content type: Comment

30 July 2014
A survey of best practices for RNA-seq data analysis

Authors: Ana Conesa, Pedro Madrigal, Sonia Tarazona, David Gomez-Cabrero, Alejandra Cervera, Andrew McPherson, Michał Wojciech Szcześniak, Daniel J. Gaffney, Laura L. Elo, Xuegong Zhang and Ali Mortazavi

Content type: Review

26 January 2016

The Erratum to this article has been published in Genome Biology 2016 17:181
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Authors: Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe and Frank Speleman

Content type: Research

18 June 2002
Differential expression analysis for sequence count data

Authors: Simon Anders and Wolfgang Huber

Content type: Method

27 October 2010
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Authors: Michael I Love, Wolfgang Huber and Simon Anders

Content type: METHOD

5 December 2014

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Microbiota of the prostate tumor environment investigated by whole-transcriptome profiling

25 January 2022
The transcriptional landscape and biomarker potential of circular RNAs in prostate cancer

25 January 2022
Functional characterisation of the amyotrophic lateral sclerosis risk locus GPX3/TNIP1

19 January 2022

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Exploring the history of smallpox vaccination with 19th Century American vaccination kits

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Reviewer Acknowledgements 2020

The Editors and staff of Genome Biology would like to warmly thank the Reviewers whose comments helped to shape the journal, for their invaluable assistance with review of manuscripts in 2020.

Genome Biology

Special Issue: Long Read Sequencing

Call for Papers: Interpretable Deep Learning Special Issue

Articles

Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M

Comparative assessment of genes driving cancer and somatic evolution in non-cancer tissues: an update of the Network of Cancer Genes (NCG) resource

Open chromatin interaction maps reveal functional regulatory elements and chromatin architecture variations during wheat evolution

IDEAS: individual level differential expression analysis for single-cell RNA-seq data

Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples

The Kardashian index: a measure of discrepant social media profile for scientists

A survey of best practices for RNA-seq data analysis

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Differential expression analysis for sequence count data

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Latest articles from Genome Medicine

Microbiota of the prostate tumor environment investigated by whole-transcriptome profiling

The transcriptional landscape and biomarker potential of circular RNAs in prostate cancer

Functional characterisation of the amyotrophic lateral sclerosis risk locus GPX3/TNIP1

Focus: Fertility

Reviews, Research highlights and commentaries

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Exploring the history of smallpox vaccination with 19th Century American vaccination kits

Transposon Day Quiz 2020

DNA Day quiz 2020

Reviewer Acknowledgements 2020

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