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A role for heritable transcriptomic variation in maize adaptation to temperate environments

Authors: Guangchao Sun, Huihui Yu, Peng Wang, Martha Lopez-Guerrero, Ravi V. Mural, Olivier N. Mizero, Marcin Grzybowski, Baoxing Song, Karin van Dijk, Daniel P. Schachtman, Chi Zhang and James C. Schnable

Content type: Research 24 March 2023
Uncovering gene-family founder events during major evolutionary transitions in animals, plants and fungi using GenEra

Authors: Josué Barrera-Redondo, Jaruwatana Sodai Lotharukpong, Hajk-Georg Drost and Susana M. Coelho

Content type: Method 24 March 2023
Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention

Authors: Fahad Ullah, Saira Jabeen, Maayan Salton, Anireddy S. N. Reddy and Asa Ben-Hur

Content type: Research 22 March 2023
Multi-omics analysis identifies drivers of protein phosphorylation

Authors: Tian Zhang, Gregory R. Keele, Isabela Gerdes Gyuricza, Matthew Vincent, Catherine Brunton, Timothy A. Bell, Pablo Hock, Ginger D. Shaw, Steven C. Munger, Fernando Pardo-Manuel de Villena, Martin T. Ferris, Joao A. Paulo, Steven P. Gygi and Gary A. Churchill

Content type: Research 21 March 2023
NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule

Authors: Hailu Fu, Haizi Zheng, Xiaoting Chen, Matthew T. Weirauch, Louis J. Muglia, Li Wang and Yaping Liu

Content type: Method 16 March 2023

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The Kardashian index: a measure of discrepant social media profile for scientists

Authors: Neil Hall

Content type: Comment 30 July 2014
A survey of best practices for RNA-seq data analysis

Authors: Ana Conesa, Pedro Madrigal, Sonia Tarazona, David Gomez-Cabrero, Alejandra Cervera, Andrew McPherson, Michał Wojciech Szcześniak, Daniel J. Gaffney, Laura L. Elo, Xuegong Zhang and Ali Mortazavi

Content type: Review 26 January 2016

The Erratum to this article has been published in Genome Biology 2016 17:181
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Authors: Michael I Love, Wolfgang Huber and Simon Anders

Content type: METHOD 5 December 2014
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Authors: Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe and Frank Speleman

Content type: Research 18 June 2002
Differential expression analysis for sequence count data

Authors: Simon Anders and Wolfgang Huber

Content type: Method 27 October 2010

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Exploring the history of smallpox vaccination with 19th Century American vaccination kits

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Genome Biology

Featured Article: Genetic mapping and molecular mechanism behind color variation in the Asian vine snake

Featured article: Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

Articles

A role for heritable transcriptomic variation in maize adaptation to temperate environments

Uncovering gene-family founder events during major evolutionary transitions in animals, plants and fungi using GenEra

Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention

Multi-omics analysis identifies drivers of protein phosphorylation

NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule

The Kardashian index: a measure of discrepant social media profile for scientists

A survey of best practices for RNA-seq data analysis

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Differential expression analysis for sequence count data

Latest articles from Genome Medicine

spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data

Automated prioritization of sick newborns for whole genome sequencing using clinical natural language processing and machine learning

Combinatorial batching of DNA for ultralow-cost detection of pathogenic variants

Focus: Fertility

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Exploring the history of smallpox vaccination with 19th Century American vaccination kits

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