Dodds PN, Rathjen JP. Plant immunity: towards an integrated view of plant-pathogen interactions. Nat Rev Genet. 2010;11:539–48.
Article
CAS
PubMed
Google Scholar
Mott GA, Middleton MA, Desveaux D, Guttman DS. Peptides and small molecules of the plant-pathogen apoplastic arena. Front Plant Sci. 2014;5:677.
Article
PubMed
PubMed Central
Google Scholar
McCann HC, Nahal H, Thakur S, Guttman DS. Identification of innate immunity elicitors using molecular signatures of natural selection. Proc Natl Acad Sci U S A. 2012;109:4215–20.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sun W, Dunning FM, Pfund C, Weingarten R, Bent AF. Within-species flagellin polymorphism in Xanthomonas campestris pv campestris and its impact on elicitation of Arabidopsis FLAGELLIN SENSING2-dependent defenses. Plant Cell. 2006;18:764–79.
Article
CAS
PubMed
PubMed Central
Google Scholar
Felix G, Duran JD, Volko S, Boller T. Plants have a sensitive perception system for the most conserved domain of bacterial flagellin. Plant J. 1999;18:265–76.
Article
CAS
PubMed
Google Scholar
Kunze G, Zipfel C, Robatzek S, Niehaus K, Boller T, Felix G. The N terminus of bacterial elongation factor Tu elicits innate immunity in Arabidopsis plants. Plant Cell. 2004;16:3496–507.
Article
CAS
PubMed
PubMed Central
Google Scholar
Monaghan J, Zipfel C. Plant pattern recognition receptor complexes at the plasma membrane. Curr Opin Plant Biol. 2012;15:349–57.
Article
CAS
PubMed
Google Scholar
Greeff C, Roux M, Mundy J, Petersen M. Receptor-like kinase complexes in plant innate immunity. Front Plant Sci. 2012;3:209.
PubMed
PubMed Central
Google Scholar
Shiu S-H, Bleecker AB. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci U S A. 2001;98:10763–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang G, Ellendorff U, Kemp B, Mansfield JW, Forsyth A, Mitchell K, et al. A genome-wide functional investigation into the roles of receptor-like proteins in Arabidopsis. Plant Physiol. 2008;147:503–17.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gou X, He K, Yang H, Yuan T, Lin H, Clouse SD, et al. Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana. BMC Genomics. 2010;11:19.
Article
PubMed
PubMed Central
Google Scholar
Sun Y, Li L, Macho AP, Han Z, Hu Z, Zipfel C, et al. Structural basis for flg22-induced activation of the Arabidopsis FLS2-BAK1 immune complex. Science. 2013;342:624–8.
Article
CAS
PubMed
Google Scholar
Schulze B, Mentzel T, Jehle AK, Mueller K, Beeler S, Boller T, et al. Rapid heteromerization and phosphorylation of ligand-activated plant transmembrane receptors and their associated kinase BAK1. J Biol Chem. 2010;285:9444–51.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hou S, Wang X, Chen D, Yang X, Wang M, Turrà D, et al. The secreted peptide PIP1 amplifies immunity through receptor-like kinase 7. PLoS Pathog. 2014;10:e1004331.
Article
PubMed
PubMed Central
Google Scholar
Minibayeva F, Beckett RP, Kranner I. Roles of apoplastic peroxidases in plant response to wounding. Phytochemistry. 2015;112:122–9.
Article
CAS
PubMed
Google Scholar
Daudi A, Cheng Z, O’Brien JA, Mammarella N, Khan S, Ausubel FM, et al. The apoplastic oxidative burst peroxidase in Arabidopsis is a major component of pattern-triggered immunity. Plant Cell. 2012;24:275–87.
Article
CAS
PubMed
PubMed Central
Google Scholar
Mammarella ND, Cheng Z, Fu ZQ, Daudi A, Bolwell GP, Dong X, et al. Apoplastic peroxidases are required for salicylic acid-mediated defense against Pseudomonas syringae. Phytochemistry. 2015;112:110–21.
Article
CAS
PubMed
PubMed Central
Google Scholar
Chinchilla D, Bauer Z, Regenass M, Boller T, Felix G. The Arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception. Plant Cell. 2006;18:465–76.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gómez-Gómez L, Boller T. FLS2: an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis. Mol Cell. 2000;5:1003–11.
Article
PubMed
Google Scholar
Zipfel C, Kunze G, Chinchilla D, Caniard A, Jones JDG, Boller T, et al. Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts Agrobacterium-mediated transformation. Cell. 2006;125:749–60.
Article
CAS
PubMed
Google Scholar
Song WY, Wang GL, Chen LL, Kim HS, Pi LY, Holsten T, et al. A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science. 1995;270:1804–6.
Article
CAS
PubMed
Google Scholar
Holton N, Nekrasov V, Ronald PC, Zipfel C. The phylogenetically-related pattern recognition receptors EFR and XA21 recruit similar immune signaling components in monocots and dicots. PLoS Pathog. 2015;11:e1004602.
Article
PubMed
PubMed Central
Google Scholar
Bahar O, Pruitt R, Luu DD, Schwessinger B, Daudi A, Liu F, et al. The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles. PeerJ. 2014;2:e242.
Article
PubMed
PubMed Central
Google Scholar
Pruitt RN, Schwessinger B, Joe A, Thomas N, Liu F, Albert M, et al. The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium. Sci Adv. 2015;1:e1500245–5.
Article
PubMed
PubMed Central
Google Scholar
Gómez-Gómez L, Felix G, Boller T. A single locus determines sensitivity to bacterial flagellin in Arabidopsis thaliana. Plant J. 1999;18:277–84.
Article
PubMed
Google Scholar
Asai T, Tena G, Plotnikova J, Willmann MR, Chiu W-L, Gomez-Gomez L, et al. MAP kinase signalling cascade in Arabidopsis innate immunity. Nature. 2002;415:977–83.
Article
CAS
PubMed
Google Scholar
Zipfel C, Robatzek S, Navarro L, Oakeley EJ, Jones JDG, Felix G, et al. Bacterial disease resistance in Arabidopsis through flagellin perception. Nature. 2004;428:764–7.
Article
CAS
PubMed
Google Scholar
Seidel SAI, Dijkman PM, Lea WA, van den Bogaart G, Jerabek-Willemsen M, Lazic A, et al. Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions. Methods. 2013;59:301–15.
Article
CAS
PubMed
PubMed Central
Google Scholar
Clarke CR, Chinchilla D, Hind SR, Taguchi F, Miki R, Ichinose Y, et al. Allelic variation in two distinct Pseudomonas syringae flagellin epitopes modulates the strength of plant immune responses but not bacterial motility. New Phytol. 2013;200:847–60.
Article
CAS
PubMed
PubMed Central
Google Scholar
Naito K, Taguchi F, Suzuki T, Inagaki Y, Toyoda K, Shiraishi T, et al. Amino acid sequence of bacterial microbe-associated molecular pattern flg22 is required for virulence. Mol Plant Microbe Interact. 2008;21:1165–74.
Article
CAS
PubMed
Google Scholar
Nekrasov V, Li J, Batoux M, Roux M, Chu Z-H, Lacombe S, et al. Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity. EMBO J. 2009;28:3428–38.
Article
CAS
PubMed
PubMed Central
Google Scholar
Cai R, Lewis J, Yan S, Liu H, Clarke CR, Campanile F, et al. The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity. PLoS Pathog. 2011;7:e1002130.
Article
CAS
PubMed
PubMed Central
Google Scholar
O’Brien HE, Thakur S, Guttman DS. Evolution of plant pathogenesis in pseudomonas syringae: a genomics perspective. Annu Rev Phytopathol. 2011;49:269–89.
Article
PubMed
Google Scholar
O’Brien HE, Thakur S, Gong Y, Fung P, Zhang J, Yuan L, et al. Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut. BMC Microbiol. 2012;12:141.
Article
PubMed
PubMed Central
Google Scholar
Belkhadir Y, Yang L, Hetzel J, Dangl JL, Chory J. The growth-defense pivot: crisis management in plants mediated by LRR-RK surface receptors. Trends Biochem Sci. 2014;39:447–56.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li J, Wen J, Lease KA, Doke JT, Tax FE, Walker JC. BAK1, an Arabidopsis LRR receptor-like protein kinase, interacts with BRI1 and modulates Brassinosteroid signaling. Cell. 2002;110:213–22.
Article
CAS
PubMed
Google Scholar
Nam KH, Li J. BRI1/BAK1, a receptor kinase pair mediating Brassinosteroid signaling. Cell. 2002;110:203–12.
Article
CAS
PubMed
Google Scholar
Bauer Z, Gómez-Gómez L, Boller T, Felix G. Sensitivity of different ecotypes and mutants of Arabidopsis thaliana toward the bacterial elicitor flagellin correlates with the presence of receptor-binding sites. J Biol Chem. 2001;276:45669–76.
Article
CAS
PubMed
Google Scholar
Danna CH, Millet YA, Koller T, Han S, Bent AF, Ronald PC, et al. The Arabidopsis flagellin receptor FLS2 mediates the perception of Xanthomonas Ax21 secreted peptides. Proc Natl Acad Sci U S A. 2011;108:9286–91.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li L, Stoeckert CJ, Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 2003;13:2178–89.
Article
CAS
PubMed
PubMed Central
Google Scholar
Edgar RC. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics. 2004;5:113.
Article
PubMed
PubMed Central
Google Scholar
Abascal F, Zardoya R, Telford MJ. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res. 2010;38:W7–13.
Article
CAS
PubMed
PubMed Central
Google Scholar
Price MN, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 2009;26:1641–50.
Article
CAS
PubMed
PubMed Central
Google Scholar
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 2007;24:1586–91.
Article
CAS
PubMed
Google Scholar
Boratyn GM, Schäffer AA, Agarwala R, Altschul SF, Lipman DJ, Madden TL. Domain enhanced lookup time accelerated BLAST. Biol Direct. 2012;7:12.
Article
CAS
PubMed
PubMed Central
Google Scholar
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25:3389–402.
Article
CAS
PubMed
PubMed Central
Google Scholar
Katoh K, Kuma K, Toh H, Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005;33:511–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, et al. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science. 2003;301:653–7.
Article
PubMed
Google Scholar
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods. 2001;25:402–8.
Article
CAS
PubMed
Google Scholar
Schneider CA, Rasband WS, Eliceiri KW. NIH Image to ImageJ: 25 years of image analysis. Nat Methods. 2012;9:671–5.
Article
CAS
PubMed
Google Scholar