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Page 73 of 161

A high-throughput-sequence analysis infrastructure technology investigation framework for the evaluation of next-generation sequencing software

Authors: Xiaoyu Liu, Sumit Middha, Steven Hart, Asha Nair, Ahmed Hadad, Patrick Duffy and Jean-Pierre Kocher

Citation: Genome Biology 2011 12(Suppl 1):P48

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Microbial community function and biomarker discovery in the human microbiome

Authors: Nicola Segata, Sahar Abubucker, Johannes Goll, Alyxandria M Schubert, Jacques Izard, Brandi L Cantarel, Beltran Rodriguez-Mueller, Levi Waldron, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T Kelley, Barbara Methé, Patrick D Schloss, Wendy S Garrett…

Citation: Genome Biology 2011 12(Suppl 1):P47

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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A comprehensive transcriptomic and biochemical evaluation of a differentiation inducing anti-leukemic principle isolated from Momordica charantia

Authors: Punit Prabha and Aparna Dixit

Citation: Genome Biology 2011 12(Suppl 1):P46

Content type: Poster presentation Published on: 19 September 2011

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Integrating whole transcriptome sequence data and public databases for analysis of somatic mutations in tumors

Authors: Amin A Momin, Brian P James, Thomas C Motter, Humam N Kadara, Garth Powis and Ignacio I Wistuba

Citation: Genome Biology 2011 12(Suppl 1):P44

Content type: Poster presentation Published on: 19 September 2011

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Utilizing whole genome sequences to study population genomics of gene networks: a case study of the Arabidopsis thaliana immune-signaling network

Authors: Mridu Middha, Yungil Kim, Peter Morrell, Chad Myers and Fumiaki Katagiri

Citation: Genome Biology 2011 12(Suppl 1):P42

Content type: Poster presentation Published on: 19 September 2011

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RNA-Seq-based transcriptional map of the bovine respiratory disease pathogen Histophilus somni 2336

Authors: Ranjit Kumar, Mark L Lawrence, James Watt, Amanda Cooksey, Shane C Burgess and Bindu Nanduri

Citation: Genome Biology 2011 12(Suppl 1):P40

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Timing chromosomal abnormalities using mutation data

Authors: Steffen Durinck, Christine Ho, Nicholas J Wang, Wilson Liao, Lakshmi R Jakkula, Eric A Collisson, Jennifer Pons, Sai-Wing Chan, Ernest T Lam, Catherine Chu, Kyunghee Park, Sung-woo Hong, Joe S Hur, Nam Huh, Isaac M Neuhaus, Siegrid S Yu…

Citation: Genome Biology 2011 12(Suppl 1):P39

Content type: Poster presentation Published on: 19 September 2011

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G-CODE: enabling systems medicine through innovative informatics

Authors: Subha Madhavan, Yuriy Gusev, Michael A Harris, David M Tanenbaum, Robinder Gauba, Krithika Bhuvaneshwar, Andrew Shinohara, Kevin Rosso, Lavinia A Carabet, Lei Song, Rebecca B Riggins, Sivanesan Dakshanamurthy, Yue Wang, Stephen W Byers, Robert Clarke and Louis M Weiner

Citation: Genome Biology 2011 12(Suppl 1):P38

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Novel purification reagents for the study of the human microbiome

Authors: George R Feehery, Eileen Dimalanta and Sriharsa Pradhan

Citation: Genome Biology 2011 12(Suppl 1):P36

Content type: Poster presentation Published on: 19 September 2011

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Introducing the non-B DNA Motif Search Tool (nBMST)

Authors: Regina Z Cer, Kevin H Bruce, Duncan E Donohue, Alpay N Temiz, Albino Bacolla, Uma S Mudunuri, Ming Yi, Natalia Volfovsky, Brian T Luke, Jack R Collins and Robert M Stephens

Citation: Genome Biology 2011 12(Suppl 1):P34

Content type: Poster presentation Published on: 19 September 2011

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InSilico DB: an online platform to collaboratively structure and export publicly available datasets from the Gene Expression Omnibus database

Authors: A Coletta, C Molter, R Duqué, D Steenhoff, J Taminau, V de Schaetzen, C Lazar, S Meganck, A Nowé, H Bersini and D Weiss

Citation: Genome Biology 2011 12(Suppl 1):P33

Content type: Poster presentation Published on: 19 September 2011

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Deciphering the reproductive protein-protein interaction network in Anopheles gambiae with Drosophila melanogaster as a framework

Authors: Daniel Achinko, Paul Mireji, Flaminia Catteruccia and Dan Masig

Citation: Genome Biology 2011 12(Suppl 1):P32

Content type: Poster presentation Published on: 19 September 2011

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Genomes in a bottle: creating standard reference materials for genomic variation - why, what and how?

Authors: Justin M Zook and Marc Salit

Citation: Genome Biology 2011 12(Suppl 1):P31

Content type: Poster presentation Published on: 19 September 2011

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Phylogenomics of prokaryotic ribosomal proteins

Authors: Natalya Yutin, Kira S Makarova, Yuri I Wolf and Eugene V Koonin

Citation: Genome Biology 2011 12(Suppl 1):P30

Content type: Poster presentation Published on: 19 September 2011

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Joint analysis of genome-wide genetic variants associated with gene expression and disease susceptibility

Authors: Chen-Hsin Yu and John Moult

Citation: Genome Biology 2011 12(Suppl 1):P29

Content type: Poster presentation Published on: 19 September 2011

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A computational approach to identify transposable element insertions in cancer cells

Authors: Israel T Silva, Daniel G Pinheiro and Wilson A Silva Jr

Citation: Genome Biology 2011 12(Suppl 1):P28

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Boundary distinction interpretation of microarray data via discrete correlate summation

Authors: Brian M Westwood, Amy L Olex, James L Norris, Leslie B Poole and Jacquelyn S Fetrow

Citation: Genome Biology 2011 12(Suppl 1):P27

Content type: Poster presentation Published on: 19 September 2011

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The mutation spectrum in Indian patients with Gaucher disease

Authors: Vartika Bisariya, Pramod K Mistry, Jun Liu, Madhumita Roy Chaudhari, Neerja Gupta and Madhulika Kabra

Citation: Genome Biology 2011 12(Suppl 1):P26

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

Authors: Todd J Treangen, Sergey Koren, Irina Astrovskaya, Dan Sommer, Bo Liu and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P25

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Whole transcriptome sequencing of normal and tumor bladder tissue samples

Authors: Wei Tang and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P23

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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A genetic survival network for glioblastoma multiforme

Authors: Andy Lin and Desmond J Smith

Citation: Genome Biology 2011 12(Suppl 1):P21

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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An unusual suspect: an uncommon human-specific synonymous coding variant within the UGT1A6 gene explains a GWAS signal and protects against bladder cancer

Authors: Wei Tang, Yi-Ping Fu, Jonine D Figueroa, Núria Malats, Montserrat Garcia-Closas, Nilanjan Chatterjee, Manolis Kogevinas, Dalsu Baris, Michael Thun, Jennifer L Hall, Immaculata De Vivo, Demetrius Albanes, Patricia Porter-Gill, Mark P Purdue, Laurie Burdett, Luyang Liu…

Citation: Genome Biology 2011 12(Suppl 1):P19

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Comparative analysis of the vaginal microbiome in health and disease

Authors: Bryan A White, Andres M Gomez, Mengfei Ho, Margret Berg Miller, Susan M Thomas, Carl J Yeoman, Suleyman Yildirim, Douglas J Creedon, Tony L Goldberg, Steven R Leigh, Karen E Nelson, Rebecca M Stumpf and Brenda A Wilson

Citation: Genome Biology 2011 12(Suppl 1):I17

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Metastats: an improved statistical method for analysis of metagenomic data

Authors: Joseph N Paulson, Mihai Pop and Hector Corrada Bravo

Citation: Genome Biology 2011 12(Suppl 1):P17

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Metabolic pathways are affected differently in Saccharomyces cerevisiae thiol peroxidase mutants during redox stress with hydrogen peroxide

Authors: Amy L Olex, Brian M Westwood, Leslie B Poole and Jacquelyn S Fetrow

Citation: Genome Biology 2011 12(Suppl 1):P16

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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De novo mutations in mental retardation

Authors: Joris A Veltman

Citation: Genome Biology 2011 12(Suppl 1):I16

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Prostate stem cell antigen (PSCA) and risk of bladder cancer: linking genotypes to functional mechanisms

Authors: Adam Mumy, Indu Kohaar, Patricia Porter-Gill, Wei Tang, Yi-Ping Fu and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P15

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Metatranscriptomics of the human gut microbiome

Authors: Thomas Sichertz Pontén

Citation: Genome Biology 2011 12(Suppl 1):I15

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Evolutionary and functional relationships revealed by the dha regulon predicted by genomic context analysis

Authors: Marinalva Martins-Pinheiro, Wanessa Cristina Lima, Cláudio A Oller and Carlos FM Menck

Citation: Genome Biology 2011 12(Suppl 1):P14

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Next-generation human genetics

Authors: Jay Shendure

Citation: Genome Biology 2011 12(Suppl 1):I14

Content type: Invited speaker presentation Published on: 19 September 2011

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Massively parallel sequencing identifies a previously unrecognized X-linked disorder resulting in lethality in male infants owing to amino-terminal acetyltransferase deficiency

Authors: Alan F Rope, Kai Wang, Rune Evjenth, Jinchuan Xing, Jennifer J Johnston, Jeffrey J Swensen, Evan W Johnson, Barry Moore, Chad D Huff, Lynne M Bird, John C Carey, John M Opitz, Cathy A Stevens, Christa Schank, Deborah Heidi Fain, Reid Robison…

Citation: Genome Biology 2011 12(Suppl 1):P13

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Reconstructing microbial communities

Authors: Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):I13

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Comparative genomic analysis of mouse and human mammary tumors

Authors: Charles M Perou

Citation: Genome Biology 2011 12(Suppl 1):I12

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

Authors: Bo Liu, Theodore Gibbons, Mohammad Ghodsi, Todd Treangen and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P11

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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A glimpse at tumor genome evolution

Authors: Elaine R Mardis

Citation: Genome Biology 2011 12(Suppl 1):I10

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Next-generation clinical sequencing in a children’s hospital

Authors: Stephen Kingsmore

Citation: Genome Biology 2011 12(Suppl 1):I9

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics

Authors: David M Kristensen, Arcady R Mushegian and Eugene V Koonin

Citation: Genome Biology 2011 12(Suppl 1):P9

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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ScaffViz: visualizing metagenome assemblies

Authors: Sergey Koren, Todd Treangen and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P8

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Exome sequencing as a tool to discover genes for heart attack risk and blood lipids

Authors: Sekar Kathiresan

Citation: Genome Biology 2011 12(Suppl 1):I8

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Microbial reference genomes for human metagenomics

Authors: Sarah K Highlander

Citation: Genome Biology 2011 12(Suppl 1):I7

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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A cost-effective and universal strategy for complete prokaryotic genome sequencing proposed by computer simulation

Authors: Jingwei Jiang, Jun Li and Frederick C Leung

Citation: Genome Biology 2011 12(Suppl 1):P6

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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NIAID genomics programs and global health

Authors: Maria Y Giovanni

Citation: Genome Biology 2011 12(Suppl 1):I6

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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A novel functional variant in 8q24 is associated with regulation of prostate stem cell antigen (PSCA) gene expression and bladder cancer risk

Authors: Yi-Ping Fu, Indu Kohaar, Adam Mumy, Wei Tang, Brian Muchmore, Patricia Porter-Gill, Luyang Liu, Jonine Figueroa, Montserrat Garcia-Closas, Dalsu Baris, Mark Purdue, Michael Thun, Demetrius Albanes, Nuria Malats, Francisco X Real, Manolis Kogevinas…

Citation: Genome Biology 2011 12(Suppl 1):P4

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Interrogating the architecture of cancer genomes

Authors: Peter Campbell

Citation: Genome Biology 2011 12(Suppl 1):I4

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Characterizing triple-negative breast cancer tumors

Authors: Sam Aparicio

Citation: Genome Biology 2011 12(Suppl 1):I2

Content type: Invited speaker presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Viral diversity in children with diarrhea in Gambia

Authors: Irina Astrovskaya, Bo Liu and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P2

Content type: Poster presentation Published on: 19 September 2011

This article is part of a Supplement: Volume 12 Supplement 1
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Next-generation human genetics

The field of human genetics is being reshaped by exome and genome sequencing. Several lessons are evident from observing the rapid development of this area over the past 2 years, and these may be instructive w...

Authors: Jay Shendure

Citation: Genome Biology 2011 12:408

Content type: Editorial Published on: 14 September 2011
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The exome factor

Exome sequencing is rapidly expanding both as a technique and in its biological applications.

Authors: Hannah Stower

Citation: Genome Biology 2011 12:407

Content type: Editorial Published on: 14 September 2011
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Exome sequencing: the expert view

To complement our special issue on exome sequencing, Genome Biology asked several leaders in the field for their views on this new approach. Leslie G Biesecker (LGB), Jim C Mullikin (JM) and Kevin V Shianna (KVS)...

Authors: Leslie G Biesecker, Kevin V Shianna and Jim C Mullikin

Citation: Genome Biology 2011 12:128

Content type: Opinion Published on: 14 September 2011
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The promise and limitations of population exomics for human evolution studies

Exome sequencing is poised to yield substantial insights into human genetic variation and evolutionary history, but there are significant challenges to overcome before this becomes a reality.

Authors: Jacob A Tennessen, Timothy D O'Connor, Michael J Bamshad and Joshua M Akey

Citation: Genome Biology 2011 12:127

Content type: Opinion Published on: 14 September 2011
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