Volume 12 Supplement 1

Beyond the Genome 2011

Meeting abstracts

Beyond the Genome 2011. Go to conference site.

Washington, DC, USA19-22 September 2011

Concatenated PDF 12S1

Page 3 of 3

Metastats: an improved statistical method for analysis of metagenomic data

Authors: Joseph N Paulson, Mihai Pop and Hector Corrada Bravo

Citation: Genome Biology 2011 12(Suppl 1):P17

Content type: Poster presentation Published on: 19 September 2011
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Detection of bladder, breast and prostate cancer using serum and tissue miRNA profiling

Authors: Patricia Porter-Gill, Yi-Ping Fu, Alpana Kaushiva, Douglas Price, William Dahut, William Figg and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P18

Content type: Poster presentation Published on: 19 September 2011
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An unusual suspect: an uncommon human-specific synonymous coding variant within the UGT1A6 gene explains a GWAS signal and protects against bladder cancer

Authors: Wei Tang, Yi-Ping Fu, Jonine D Figueroa, Núria Malats, Montserrat Garcia-Closas, Nilanjan Chatterjee, Manolis Kogevinas, Dalsu Baris, Michael Thun, Jennifer L Hall, Immaculata De Vivo, Demetrius Albanes, Patricia Porter-Gill, Mark P Purdue, Laurie Burdett, Luyang Liu…

Citation: Genome Biology 2011 12(Suppl 1):P19

Content type: Poster presentation Published on: 19 September 2011
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A comprehensive census of horizontal gene transfers from prokaryotes to unikonts

Authors: Pere Puigbò, Sergei Mekhedov, Yuri I Wolf and Eugene V Koonin

Citation: Genome Biology 2011 12(Suppl 1):P20

Content type: Poster presentation Published on: 19 September 2011
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A genetic survival network for glioblastoma multiforme

Authors: Andy Lin and Desmond J Smith

Citation: Genome Biology 2011 12(Suppl 1):P21

Content type: Poster presentation Published on: 19 September 2011
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Building a protein interaction (PIN) database for autism candidate genes

Authors: Catherine Croft Swanwick and Sharmila Banerjee-Basu

Citation: Genome Biology 2011 12(Suppl 1):P22

Content type: Poster presentation Published on: 19 September 2011
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Whole transcriptome sequencing of normal and tumor bladder tissue samples

Authors: Wei Tang and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P23

Content type: Poster presentation Published on: 19 September 2011
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Identification of functional genetic variants associated with prostate cancer through analysis of genome-wide genetic and epigenetic datasets

Authors: McAnthony Tarway, Wei Tang and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P24

Content type: Poster presentation Published on: 19 September 2011
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MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

Authors: Todd J Treangen, Sergey Koren, Irina Astrovskaya, Dan Sommer, Bo Liu and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P25

Content type: Poster presentation Published on: 19 September 2011
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The mutation spectrum in Indian patients with Gaucher disease

Authors: Vartika Bisariya, Pramod K Mistry, Jun Liu, Madhumita Roy Chaudhari, Neerja Gupta and Madhulika Kabra

Citation: Genome Biology 2011 12(Suppl 1):P26

Content type: Poster presentation Published on: 19 September 2011
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Boundary distinction interpretation of microarray data via discrete correlate summation

Authors: Brian M Westwood, Amy L Olex, James L Norris, Leslie B Poole and Jacquelyn S Fetrow

Citation: Genome Biology 2011 12(Suppl 1):P27

Content type: Poster presentation Published on: 19 September 2011
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A computational approach to identify transposable element insertions in cancer cells

Authors: Israel T Silva, Daniel G Pinheiro and Wilson A Silva Jr

Citation: Genome Biology 2011 12(Suppl 1):P28

Content type: Poster presentation Published on: 19 September 2011
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Joint analysis of genome-wide genetic variants associated with gene expression and disease susceptibility

Authors: Chen-Hsin Yu and John Moult

Citation: Genome Biology 2011 12(Suppl 1):P29

Content type: Poster presentation Published on: 19 September 2011
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Phylogenomics of prokaryotic ribosomal proteins

Authors: Natalya Yutin, Kira S Makarova, Yuri I Wolf and Eugene V Koonin

Citation: Genome Biology 2011 12(Suppl 1):P30

Content type: Poster presentation Published on: 19 September 2011
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Genomes in a bottle: creating standard reference materials for genomic variation - why, what and how?

Authors: Justin M Zook and Marc Salit

Citation: Genome Biology 2011 12(Suppl 1):P31

Content type: Poster presentation Published on: 19 September 2011
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Deciphering the reproductive protein-protein interaction network in Anopheles gambiae with Drosophila melanogasteras a framework

Authors: Daniel Achinko, Paul Mireji, Flaminia Catteruccia and Dan Masig

Citation: Genome Biology 2011 12(Suppl 1):P32

Content type: Poster presentation Published on: 19 September 2011
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InSilico DB: an online platform to collaboratively structure and export publicly available datasets from the Gene Expression Omnibus database

Authors: A Coletta, C Molter, R Duqué, D Steenhoff, J Taminau, V de Schaetzen, C Lazar, S Meganck, A Nowé, H Bersini and D Weiss

Citation: Genome Biology 2011 12(Suppl 1):P33

Content type: Poster presentation Published on: 19 September 2011
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Introducing the non-B DNA Motif Search Tool (nBMST)

Authors: Regina Z Cer, Kevin H Bruce, Duncan E Donohue, Alpay N Temiz, Albino Bacolla, Uma S Mudunuri, Ming Yi, Natalia Volfovsky, Brian T Luke, Jack R Collins and Robert M Stephens

Citation: Genome Biology 2011 12(Suppl 1):P34

Content type: Poster presentation Published on: 19 September 2011
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Integrating GWAS with gene expression data to dissect the genetic architecture of triple-negative breast cancer

Authors: Chindo Hicks, Ranjit Kumar, Antonio Pannuti and Lucio Miele

Citation: Genome Biology 2011 12(Suppl 1):P35

Content type: Poster presentation Published on: 19 September 2011
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Abstract not submitted for online publication

Authors:

Citation: Genome Biology 2011 12(Suppl 1):P36

Content type: Poster presentation Published on: 19 September 2011
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An amalgamated risk estimation model (REM) and assay integration into future REMs

Authors: Peter Cartwright, Erica Ramos, India Bradley and Eric Hanson

Citation: Genome Biology 2011 12(Suppl 1):P37

Content type: Poster presentation Published on: 19 September 2011
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G-CODE: enabling systems medicine through innovative informatics

Authors: Subha Madhavan, Yuriy Gusev, Michael A Harris, David M Tanenbaum, Robinder Gauba, Krithika Bhuvaneshwar, Andrew Shinohara, Kevin Rosso, Lavinia A Carabet, Lei Song, Rebecca B Riggins, Sivanesan Dakshanamurthy, Yue Wang, Stephen W Byers, Robert Clarke and Louis M Weiner

Citation: Genome Biology 2011 12(Suppl 1):P38

Content type: Poster presentation Published on: 19 September 2011
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Timing chromosomal abnormalities using mutation data

Authors: Steffen Durinck, Christine Ho, Nicholas J Wang, Wilson Liao, Lakshmi R Jakkula, Eric A Collisson, Jennifer Pons, Sai-Wing Chan, Ernest T Lam, Catherine Chu, Kyunghee Park, Sung-woo Hong, Joe S Hur, Nam Huh, Isaac M Neuhaus, Siegrid S Yu…

Citation: Genome Biology 2011 12(Suppl 1):P39

Content type: Poster presentation Published on: 19 September 2011
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RNA-Seq-based transcriptional map of the bovine respiratory disease pathogen Histophilus somni 2336

Authors: Ranjit Kumar, Mark L Lawrence, James Watt, Amanda Cooksey, Shane C Burgess and Bindu Nanduri

Citation: Genome Biology 2011 12(Suppl 1):P40

Content type: Poster presentation Published on: 19 September 2011
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On using optical maps for genome assembly

Authors: Henry Lin and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P41

Content type: Poster presentation Published on: 19 September 2011
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Utilizing whole genome sequences to study population genomics of gene networks: a case study of the Arabidopsis thalianaimmune-signaling network

Authors: Mridu Middha, Yungil Kim, Peter Morrell, Chad Myers and Fumiaki Katagiri

Citation: Genome Biology 2011 12(Suppl 1):P42

Content type: Poster presentation Published on: 19 September 2011
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Genomes or exomes: evaluation of cost, time and coverage

Authors: Sumit Middha, Jeanne L Theis, Adele H Goodloe, Timothy M Olson and Jean-Pierre A Kocher

Citation: Genome Biology 2011 12(Suppl 1):P43

Content type: Poster presentation Published on: 19 September 2011
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Integrating whole transcriptome sequence data and public databases for analysis of somatic mutations in tumors

Authors: Amin A Momin, Brian P James, Thomas C Motter, Humam N Kadara, Garth Powis and Ignacio I Wistuba

Citation: Genome Biology 2011 12(Suppl 1):P44

Content type: Poster presentation Published on: 19 September 2011
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Effective detection of rare variants in pooled DNA samples using cross-pool tail-curve analysis

Authors: Tejasvi S Niranjan, Abby Adamczyk, Hector Corrada Bravo, Margaret A Taub, Sarah J Wheelan, Rafael Irizarry and Tao Wang

Citation: Genome Biology 2011 12(Suppl 1):P45

Content type: Poster presentation Published on: 19 September 2011
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A comprehensive transcriptomic and biochemical evaluation of a differentiation inducing anti-leukemic principle isolated from Momordica charantia

Authors: Punit Prabha and Aparna Dixit

Citation: Genome Biology 2011 12(Suppl 1):P46

Content type: Poster presentation Published on: 19 September 2011
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Microbial community function and biomarker discovery in the human microbiome

Authors: Nicola Segata, Sahar Abubucker, Johannes Goll, Alyxandria M Schubert, Jacques Izard, Brandi L Cantarel, Beltran Rodriguez-Mueller, Levi Waldron, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T Kelley, Barbara Methé, Patrick D Schloss, Wendy S Garrett…

Citation: Genome Biology 2011 12(Suppl 1):P47

Content type: Poster presentation Published on: 19 September 2011
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A high-throughput-sequence analysis infrastructure technology investigation framework for the evaluation of next-generation sequencing software

Authors: Xiaoyu Liu, Sumit Middha, Steven Hart, Asha Nair, Ahmed Hadad, Patrick Duffy and Jean-Pierre Kocher

Citation: Genome Biology 2011 12(Suppl 1):P48

Content type: Poster presentation Published on: 19 September 2011
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Beyond the Genome 2011

Meeting abstracts

Metastats: an improved statistical method for analysis of metagenomic data

Detection of bladder, breast and prostate cancer using serum and tissue miRNA profiling

An unusual suspect: an uncommon human-specific synonymous coding variant within the UGT1A6 gene explains a GWAS signal and protects against bladder cancer

A comprehensive census of horizontal gene transfers from prokaryotes to unikonts

A genetic survival network for glioblastoma multiforme

Building a protein interaction (PIN) database for autism candidate genes

Whole transcriptome sequencing of normal and tumor bladder tissue samples

Identification of functional genetic variants associated with prostate cancer through analysis of genome-wide genetic and epigenetic datasets

MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

The mutation spectrum in Indian patients with Gaucher disease

Boundary distinction interpretation of microarray data via discrete correlate summation

A computational approach to identify transposable element insertions in cancer cells

Joint analysis of genome-wide genetic variants associated with gene expression and disease susceptibility

Phylogenomics of prokaryotic ribosomal proteins

Genomes in a bottle: creating standard reference materials for genomic variation - why, what and how?

Deciphering the reproductive protein-protein interaction network in Anopheles gambiae with Drosophila melanogasteras a framework

InSilico DB: an online platform to collaboratively structure and export publicly available datasets from the Gene Expression Omnibus database

Introducing the non-B DNA Motif Search Tool (nBMST)

Integrating GWAS with gene expression data to dissect the genetic architecture of triple-negative breast cancer

Abstract not submitted for online publication

An amalgamated risk estimation model (REM) and assay integration into future REMs

G-CODE: enabling systems medicine through innovative informatics

Timing chromosomal abnormalities using mutation data

RNA-Seq-based transcriptional map of the bovine respiratory disease pathogen Histophilus somni 2336

On using optical maps for genome assembly

Utilizing whole genome sequences to study population genomics of gene networks: a case study of the Arabidopsis thalianaimmune-signaling network

Genomes or exomes: evaluation of cost, time and coverage

Integrating whole transcriptome sequence data and public databases for analysis of somatic mutations in tumors

Effective detection of rare variants in pooled DNA samples using cross-pool tail-curve analysis

A comprehensive transcriptomic and biochemical evaluation of a differentiation inducing anti-leukemic principle isolated from Momordica charantia

Microbial community function and biomarker discovery in the human microbiome

A high-throughput-sequence analysis infrastructure technology investigation framework for the evaluation of next-generation sequencing software

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