From: Computational methods for chromosome-scale haplotype reconstruction
Initiatives | # samples/#haplotypes | Technologies | Links |
---|---|---|---|
2 trios and 1 sample, 6 haplotypes | PacBio, ONT, Illumina, BioNano, Strand-seq, 10xG | ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/ | |
Human Genome Structural Variation Consortium [15] (HGSVC) | > 3 trios, > 6 haplotypes | PacBio, Illumina, BioNano, Hi-C, Strand-seq, 10xG | |
Vertebrate Genome Project (VGP; facilitated by Genome 10 K), Darwin Tree of Life Project | > 100, ongoing haplotyping efforts | 10xG, PacBio, Hi-C | |
Human Pangenome Project | > 10, > 20 haplotypes | PacBio, ONT, Hi-C | https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=HPRC/ |
Earth Biogenome Project (facilitated by Genome 10 K) | > 10, ongoing haplotyping efforts | PacBio, Hi-C | |
The DNA Zoo project | > 10, ongoing haplotyping efforts | Hi-C and WGS | |
Japanese Reference Project [19] (1KJPN) | > 1, > 2 haplotypes | PacBio, Illumina | |
Individual samples, two haplotypes each (except CHM1 and CHM13) | PacBio, ONT, BioNano, Hi-C, Illumina | n/a |