Table 1 List of GO terms found to be significantly enriched in the set of genes with at least ten DMCs reflecting a gain of methylation in their gene bodies in archegonia or antherozoids compared to vegetative gametophytes

GO:0007017

Microtubule-based process

86

18

5.17

<0.00001

GO:0006355

Regulation of transcription (DNA-templated)

239

29

14.36

0.00018

GO:0016570

Histone modification

18

7

1.08

0.00291

GO:0071586

CAAX-box protein processing

2

2

0.12

0.00360

GO:0034968

Histone lysine methylation

7

3

0.42

0.00627

GO:0031047

Gene silencing by RNA

7

3

0.42

0.00627

GO:0006376

mRNA splice site selection

3

2

0.18

0.01036

GO:0006075

(1- > 3)-beta-D-glucan biosynthetic process

3

2

0.18

0.01036

GO:0042147

Retrograde transport (endosome to Golgi)

3

2

0.18

0.01036

GO:0006396

RNA processing

146

20

8.77

0.03011

GO:0007275

Multicellular organism development

12

3

0.72

0.03149

GO:0000079

Regulation of cyclin-dependent

5

2

0.30

0.03187

Protein serine/threonine kinase activity

GO:0051276

Chromosome organization

65

15

3.91

0.03608

GO:0006558

L-phenylalanine metabolic process

6

2

0.32

0.04593