Open Access

Erratum to: comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach

  • Nariman Battulin1, 2, 5,
  • Veniamin S. Fishman1, 2, 5,
  • Alexander M. Mazur3, 5,
  • Mikhail Pomaznoy1, 2,
  • Anna A. Khabarova1, 5,
  • Dmitry A. Afonnikov1, 2, 5,
  • Egor B. Prokhortchouk3, 4, 5 and
  • Oleg L. Serov1, 2, 5Email author
Contributed equally
Genome Biology201617:6

https://doi.org/10.1186/s13059-016-0868-5

Received: 4 January 2016

Accepted: 4 January 2016

Published: 14 January 2016

The original article was published in Genome Biology 2015 16:77

It has come to our attention that there are a number of minor errors in our recent article [1].
  1. 1.

    In the sentence ‘This increase in P(s) values was compensated by a lower contact probability in a diapason of long-range interactions at 10^−7 to 10^−8 bp.’, the negative signs should be removed. That is, it is a lower probability of long-range interactions at 10^7 to 10^8 bp.

     
  2. 2.

    In the sentence ‘A detailed analysis showed that the probabilities of contacts in fibroblasts were less than those in sperm cells, when counting regions separated by less than 40 Mb; for loci separated by 50 to 150 Mb, sperm cells display more than two times higher contact probabilities compared with fibroblasts cells (Fig. 5b).’ it should say ‘more than those in sperm cells’.

     
  3. 3.
    There is an error in Fig. 6, panels b and c. In the original figure, the labeling of the rows and columns on the heatmaps got misaligned, such that row/column 6 was labeled 5, 11 was labeled 10, and so on. A corrected version of the figure is provided. So for instance, there is a strong contact between chromosomes 9 and 11, and not between 10 and 12 as it appeared on the earlier version. The legend of the figure is unchanged.
    Fig. 6

    Analysis of intrachromosomal contacts in sperm cells and fibroblasts. a The ratio between intra- and interchromosomal contact numbers for sperm cells (green) and fibroblasts (blue). (b, c) The two-dimensional heatmaps show the observed number of interactions between any pair of chromosomes divided by the expected number of interactions between those chromosomes for sperm cells (b) and fibroblasts (c). The color of each dot represents the enrichment (red) or depletion (blue) of contacts compared with the expected values. d The observed number of interactions between any pair of chromosomes plotted against the difference in the lengths of those chromosomes. The dotted lined represents the linear trend for obtained values

     

Notes

Declarations

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

Authors’ Affiliations

(1)
Institute of Cytology and Genetics
(2)
Novosibirsk State University
(3)
Center ‘Bioengineering’, Russian Academy of Sciences
(4)
National Research Center, Kurchatov Institute
(5)
Skoltech Center for Stem Cell Research, Skolkovo Institute of Science and Technology, Skolkovo 1443025

References

  1. Battulin N, Fishman VS, Mazur A, Pomaznoy M, Khabarova AA, Afonnikov DA, et al. Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach. Genome Biol. 2015;16:77.PubMedPubMed CentralView ArticleGoogle Scholar

Copyright

© Battulin et al. 2016

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