Fig. 5
From: Exploring the rice dispensable genome using a metagenome-like assembly strategy
The approach, based on the integration of alignment results and linkage disequilibrium (LD), to assign each dispensable sequence a genomic position relative to the Nipponbare reference genome. a The top five Blast hits for the contig harboring GW5 when aligned to the Nipponbare genome. b Chromosome locations most tightly linked with the contig harboring GW5 determined by the 16 SNPs of this contig. c The LD between a specific SNP (the third SNP in (b)) of the contig harboring GW5 and the 280,000 SNPs selected from whole genome SNPs. The SNP with the highest LD has chromosome location chr05: 5357654