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Table 8 Genome-specific non-repetitive bases

From: Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

Genome Genome-specific Regions Mean ± standard deviation Maximum size
Nipponbare 1,574,801 bp 2,250 699 ± 904 8,463
IR64 1,336,650 bp 1,702 785 ± 1066 10,400
DJ123 1,263,681 bp 1,569 805 ± 1,058 8,960
  1. Identified sequences must be at least 100 bp long with no alignments to the other genomes, average between 10× and 100× k-mer coverage in that genome, and average below 10× k-mer coverage using the reads from the other two genomes.
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Genome Biology

ISSN: 1474-760X

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