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Table 8 Genome-specific non-repetitive bases

From: Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

Genome

Genome-specific

Regions

Mean ± standard deviation

Maximum size

Nipponbare

1,574,801 bp

2,250

699 ± 904

8,463

IR64

1,336,650 bp

1,702

785 ± 1066

10,400

DJ123

1,263,681 bp

1,569

805 ± 1,058

8,960

  1. Identified sequences must be at least 100 bp long with no alignments to the other genomes, average between 10× and 100× k-mer coverage in that genome, and average below 10× k-mer coverage using the reads from the other two genomes.
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Genome Biology

ISSN: 1474-760X

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