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Table 5 Comparison of the three de novo assemblies to the Indica reference (93-11 from [28])

From: Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

  Unaligned reference bases Unaligned assembly bases Average ID SNPs and smal indels Indels > 5 kbp Inversions Relocations Translocations
Nipponbare 16.95% 8.90% 98.91% 2,813,076 75,944 1,162 11,627 11,030
IR64 13.29% 4.31% 99.52% 1,228,732 35,762 644 6,985 7,101
DJ123 14.37% 6.78% 99.16% 2,264,541 62,191 974 8,582 10,170