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Table 1 Assembly and annotation statistics of the three de novo assemblies used in this study

From: Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

  Nipponbare IR64 DJ123
Total span 355.6 Mbp 345.2 Mbp 345.9 Mbp
Total bases 318.2 Mbp 316.3 Mbp 321.2 Mbp
Genome coveragea (span/bases) 91.2%/81.8% 88.5%/81.3% 88.6%/82.5%
Number of scaffolds 4,110 2,919 2,819
N50 scaffold span 213 kbp 293 kbp 323 kbp
Max scaffold span 1.37 Mbp 2.85 Mbp 2.38 Mbp
Number of contigs (>1,000 bp) 27,486 26,160 23,902
N50 contig size 21.9kbp 22.2 kbp 25.5 kbp
Max contig size 133 kbp 160 kbp 252 kbp
Total genes 39,083 37,758 37,812
Median gene length 2,224 2,275 2,285
Mean exons per transcript 4.8 4.8 4.9
  1. aAssumes the total genome size is 389 Mbp, as according to IRGSP [27].