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Table 1 Schizophrenia-associated differentially methylated positions in the prefrontal cortex

From: Methylomic profiling of human brain tissue supports a neurodevelopmental origin for schizophrenia

Probe ID

Genomic position (hg19)

Gene

Gene region

P -value

FDR

Mean SZ

Mean control

Beta difference

cg26173173

chr8:144642813

GSDMD

Body

1.16E-07

0.03

0.83

0.79

0.04

cg24803255

chr13:114807060

RASA3

Body

1.25E-07

0.03

0.56

0.65

−0.09

cg00903099

chr7:154862441

HTR5A

TSS200

2.40E-07

0.03

0.09

0.12

−0.02

cg08171022

chr11:70185278

PPFIA1

Body

2.85E-07

0.03

0.48

0.53

−0.05

cg02857643

chr17:48696108

CACNA1G

Body

1.63E-06

0.1

0.87

0.92

−0.05

cg00236305

chr2:1796076

MYT1L

Body

1.75E-06

0.1

0.67

0.73

−0.06

cg14966346

chr14:104152124

KLC1

Body

2.51E-06

0.1

0.72

0.77

−0.05

cg13079528

chr7:4027346

SDK1

Body

2.75E-06

0.1

0.71

0.79

−0.08

cg14429765

chr8:6492531

MCPH1

Body

2.79E-06

0.1

0.79

0.76

0.03

cg08602214

chr8:22864392

RHOBTB2

Body

2.87E-06

0.1

0.69

0.75

−0.07

cg19735533

chr2:241196887

-

-

2.94E-06

0.1

0.76

0.81

−0.06

cg09507608

chr22:29873338

-

-

2.95E-06

0.1

0.56

0.62

−0.06

cg23844013

chr1:57383752

C8A

3' UTR

3.20E-06

0.1

0.82

0.79

0.03

cg26578910

chr19:47204096

PRKD2

Body

3.47E-06

0.1

0.67

0.71

−0.04

cg21847368

chr13:113744010

MCF2L

Body

3.70E-06

0.1

0.80

0.84

−0.03

cg03607729

chr16:25138698

LCMT1

Body

4.19E-06

0.1

0.70

0.75

−0.04

cg10248981

chr10:126157948

LHPP

Body

4.32E-06

0.1

0.55

0.63

−0.07

cg03445663

chr2:242170236

HDLBP

Body

4.59E-06

0.1

0.51

0.59

−0.08

cg15079231

chr3:42572745

VIPR1

Body

4.93E-06

0.1

0.76

0.80

−0.04

cg21341878

chr4:2278462

ZFYVE28

Body

5.14E-06

0.1

0.75

0.81

−0.05

cg04922803

chr12:104444418

GLT8D2

TSS1500

5.19E-06

0.1

0.68

0.62

0.06

cg18857062

chr6:43276478

CRIP3

Body

5.29E-06

0.1

0.21

0.26

−0.04

  1. Listed are all probes associated with schizophrenia (SZ) with FDR ≤0.1. The 100 top-ranked DMPs are listed in Table S4 in Additional file 1.