Skip to main content

Table 2 Summary of unigene sequences of asterids, basal eudicots, non-grass monocots, and basal angiosperms included in phylogenetic study

From: A genome triplication associated with early diversification of the core eudicots

Species Lineage Source Number of reads/ESTs Size of data Assembly method(s) Number of unigenes
Panax quinquefolius Asterid NCBI-SRA 209,745 89.7 Mb MIRA 22,881
Lindenbergia phillipensis Asterid PPGP 69,545,362 5.9 Gb CLC 104,904
Helianthus annuus Asterid TIGR PTA 93,279 NA Megablast-CAP3 44,662
Solanum tuberosum Asterid TIGR PTA 219,485 NA Megablast-CAP3 81,072
Mimulus gutatus Asterid PlantGDB 231,012 NA Vmatch-PaCE-CAP3 39,577
Papaver somniferum Basal eudicot 1KP + SRA 140,604,904 + 3,709,876 10.3 Gb + 1.3 Gb MIRA-SOAPDenovo-CAP3 252,894
Papaver setigerum Basal eudicot 1KP 134,478,938 9.8 Gb SOAPDenovo-CAP3 406,167
Papaver rhoeas Basal eudicot 1KP 157,506,374 11.5 Gb SOAPDenovo-CAP3 383,426
Papaver bracteatum Basal eudicot 1KP 89,663,900 6.5 Gb SOAPDenovo-CAP3 201,564
Eschscholzia californica Basal eudicot NCBI + SRA + 1KP 14,381 + 559,470 + 133,422,402 6.8 Mb + 55 Mb + 9.7 Gb MIRA-SOAPDenovo-CAP3 165,260
Argemone mexicana Basal eudicot 1KP + NCBI 144,520,360 + 1,692 10.5 Gb + 1 Mb SOAPDenovo- CAP3 148,533
Akebia trifoliata Basal eudicot 1KP 29,156,514 2.1 Gb CLC-CAP3 46,024
Podophyllum pelatum Basal eudicot 1KP 20,139,210 1.5 Gb CLC-CAP3 31,472
Platanus occidentalis Basal eudicot 1KP 25,508,642 1.9 Gb CLC-CAP3 42,373
Aquilegia formosa x Aquilegia pubescens Basal eudicot PlantGDB 85,040 NA Vmatch-PaCE-CAP3 19,615
Mesembryanthemum crystallinum Caryophillid PlantGDB 27,553 NA Vmatch-PaCE-CAP3 11,317
Beta vulgaris Caryophillid PlantGDB 25,883 NA Vmatch-PaCE-CAP3 18,009
Acorus americanus Monocot MonATOL + 1KP 149,320 + 15,427,316 44.9 Mb + 1.1 Gb MIRA-SOAPDenovo-CAP3 59,453
Chamaedorea seifrizii Monocot MonATOL 33,100,948 2.5 Gb CLC 68,489
Chlorophytum rhizopendulum Monocot MonATOL 59,505,714 4.5 Gb CLC 58,766
Neoregelia sp. Monocot MonATOL 49,121,506 3.7 Gb CLC 63,269
Typha angustifolia Monocot MonATOL 70,733,124 5.7 Gb CLC 57,980
Persea americana (avocado) Magnoliid AAGP 2,336,819 683 Mb MIRA 132,532
Aristolochia fimbriata (Dutchman's pipe) Magnoliid AAGP 3,930,505 880 Mb MIRA 155,371
Liriodendron tulipifera (yellow-poplar) Magnoliid AAGP 2,327,654 543 Mb MIRA 137,923
Nuphar advena (yellow pond lily) Basal angiosperm AAGP 3,889,719 1.1 Gb MIRA 289,773
Amborella trichopoda Basal angiosperm AAGP 2,943,273 776 Mb MIRA 208394
  1. 1KP, 1000 Green Plant Transcriptome Project; AAGP, Ancestral Angiosperm Genome Project [44]; MonATOL, Monocot Tree of Life Project [42]; NA, not available; NCBI, National Center for Biotechnology Information; PPGP, Parasitic Plant Genome Project [65]; SRA, Sequence Read Archive; TIGR PTA, The Institute for Genomic Research Plant Transcript Assemblies [66].