Table 2 Summary of unigene sequences of asterids, basal eudicots, non-grass monocots, and basal angiosperms included in phylogenetic study
From: A genome triplication associated with early diversification of the core eudicots
Species | Lineage | Source | Number of reads/ESTs | Size of data | Assembly method(s) | Number of unigenes |
|---|---|---|---|---|---|---|
Panax quinquefolius | Asterid | NCBI-SRA | 209,745 | 89.7 Mb | MIRA | 22,881 |
Lindenbergia phillipensis | Asterid | PPGP | 69,545,362 | 5.9 Gb | CLC | 104,904 |
Helianthus annuus | Asterid | TIGR PTA | 93,279 | NA | Megablast-CAP3 | 44,662 |
Solanum tuberosum | Asterid | TIGR PTA | 219,485 | NA | Megablast-CAP3 | 81,072 |
Mimulus gutatus | Asterid | PlantGDB | 231,012 | NA | Vmatch-PaCE-CAP3 | 39,577 |
Papaver somniferum | Basal eudicot | 1KP + SRA | 140,604,904 + 3,709,876 | 10.3 Gb + 1.3 Gb | MIRA-SOAPDenovo-CAP3 | 252,894 |
Papaver setigerum | Basal eudicot | 1KP | 134,478,938 | 9.8 Gb | SOAPDenovo-CAP3 | 406,167 |
Papaver rhoeas | Basal eudicot | 1KP | 157,506,374 | 11.5 Gb | SOAPDenovo-CAP3 | 383,426 |
Papaver bracteatum | Basal eudicot | 1KP | 89,663,900 | 6.5 Gb | SOAPDenovo-CAP3 | 201,564 |
Eschscholzia californica | Basal eudicot | NCBI + SRA + 1KP | 14,381 + 559,470 + 133,422,402 | 6.8 Mb + 55 Mb + 9.7 Gb | MIRA-SOAPDenovo-CAP3 | 165,260 |
Argemone mexicana | Basal eudicot | 1KP + NCBI | 144,520,360 + 1,692 | 10.5 Gb + 1 Mb | SOAPDenovo- CAP3 | 148,533 |
Akebia trifoliata | Basal eudicot | 1KP | 29,156,514 | 2.1 Gb | CLC-CAP3 | 46,024 |
Podophyllum pelatum | Basal eudicot | 1KP | 20,139,210 | 1.5 Gb | CLC-CAP3 | 31,472 |
Platanus occidentalis | Basal eudicot | 1KP | 25,508,642 | 1.9 Gb | CLC-CAP3 | 42,373 |
Aquilegia formosa x Aquilegia pubescens | Basal eudicot | PlantGDB | 85,040 | NA | Vmatch-PaCE-CAP3 | 19,615 |
Mesembryanthemum crystallinum | Caryophillid | PlantGDB | 27,553 | NA | Vmatch-PaCE-CAP3 | 11,317 |
Beta vulgaris | Caryophillid | PlantGDB | 25,883 | NA | Vmatch-PaCE-CAP3 | 18,009 |
Acorus americanus | Monocot | MonATOL + 1KP | 149,320 + 15,427,316 | 44.9 Mb + 1.1 Gb | MIRA-SOAPDenovo-CAP3 | 59,453 |
Chamaedorea seifrizii | Monocot | MonATOL | 33,100,948 | 2.5 Gb | CLC | 68,489 |
Chlorophytum rhizopendulum | Monocot | MonATOL | 59,505,714 | 4.5 Gb | CLC | 58,766 |
Neoregelia sp. | Monocot | MonATOL | 49,121,506 | 3.7 Gb | CLC | 63,269 |
Typha angustifolia | Monocot | MonATOL | 70,733,124 | 5.7 Gb | CLC | 57,980 |
Persea americana (avocado) | Magnoliid | AAGP | 2,336,819 | 683 Mb | MIRA | 132,532 |
Aristolochia fimbriata (Dutchman's pipe) | Magnoliid | AAGP | 3,930,505 | 880 Mb | MIRA | 155,371 |
Liriodendron tulipifera (yellow-poplar) | Magnoliid | AAGP | 2,327,654 | 543 Mb | MIRA | 137,923 |
Nuphar advena (yellow pond lily) | Basal angiosperm | AAGP | 3,889,719 | 1.1 Gb | MIRA | 289,773 |
Amborella trichopoda | Basal angiosperm | AAGP | 2,943,273 | 776 Mb | MIRA | 208394 |