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Table 1 Summary of datasets for eight sequenced plant genomes included in this study

From: A genome triplication associated with early diversification of the core eudicots

Species Annotation version Number of annotated genes
Arabidopsis thaliana (thale cress) TAIR version 9 27,379
Carica papaya (papaya) ASGPB release 25,536
Cucumis sativus (cucumber) BGI release 21,635
Populus trichocarpa (black cottonwood) JGI version 2.0 41,377
Glycine max (soybean) Phytozome version 1.0 55,787
Vitis vinifera (grape vine) Genoscope release 30,434
Oryza sativa (rice) RGAP release 6.1 56,979
Sorghum bicolor JGI version 1.4 34,496
  1. These eight genome sequences were used to construct orthogroups, which were then populated with additional unigenes of asterids, basal eudicots, non-grass monocots, and basal angiosperms. The number of annotated genes in each genome is indicated. ASGPB, Advanced Studies of Genomics, Proteomics and Bioinformatics; JGI, Joint Genome Institute; RGAP, Rice Genome Annotation Project; TAIR, The Arabidopsis Information Resource.