Table 5 Time and memory usage for different stage of biastools when processing whole genome simulated data. The alignment method is Minimap2, and the sorting is of the alignment is done by Samtools sort. All the experiment are done with single thread
From: Measuring, visualizing, and diagnosing reference bias with biastools
| Â | Time (hr) | Memory (GB) |
|---|---|---|
Alignment and sorting | 21.73 | 12.32 |
Biastools assignment (sim) | 9.25 | 37.90 |
Biastools assignment (real) | 8.46 | 15.39 |
Biastools scan | 47.38 | 368.17 |
Biastools scan from mpileup | 6.42 | 368.07 |