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Fig. 4 | Genome Biology

Fig. 4

From: Next-Gen GWAS: full 2D epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Fig. 4

NGG provides a direct estimation of the SNP effect (\(\theta\)) on the phenotype (Col-0 being the reference genome). The upper plot presents the NGG signal combining support (effect or not) × absolute value of the estimated effect of the genetic variation. The lower plot reports the estimated effect of each SNP (θ). Colored data points (according to chromosome number) are emerging from the noise in a bootstrap procedure comparable to the permGWAS procedure (18)

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Genome Biology

ISSN: 1474-760X

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