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Table 1 Summary of the data used for simulation. Columns are number of cells (n_cells), number of unique genes expressed per cell on average in the RNA profile (nGene_RNA), total counts expressed per cell on average in RNA profile (nCount_RNA), number of unique fragments per cell on average in the ATAC profile (nFrag_ATAC), number of peak counts per cell on average in the ATAC profile (nPeakCount_ATAC)

From: Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data

Source

n_cells

nGene_RNA

nCount_RNA

nFrag_ATAC

nPeakCount_ATAC

PBMC

10085

2013

4463

15510

11305

BMMC site 1 donor 2 (S1D2)

6740

1365

2525

11064

7512

BMMC site 1 or donor 1

29486

1205

2227

11798

7615

Share-seq mouse skin

32231

637

1245

5622

4231

HPAP multiome

13109

3651

13244

13462

8465

HPAP scRNA-seq

32115

4086

21032

NA

NA

HPAP snATAC-seq

26439

NA

NA

25098

16892