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Table 1 GoM DE simulation running times for the single-cell data sets with \(n_s = 10,000\) simulation states; n is the number of cells, m is the number of genes or accessibility peaks analyzed, and K is the number of topics. See “Computing environment” for more details

From: GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership

Data set

n

m

K

runtime

PBMC [29]

94,655

21,952

6

5.1 h

Epithelial airway [86]

7193

18,388

7

1.0 h

Mouse Atlas, kidney only [97]

6431

270,864

10

3.2 h

Hematopoietic system [104]

2034

126,719

10

1.1 h