From: MBE: model-based enrichment estimation and prediction for differential sequencing data
Library | L | M′ | T | Read type | Cover | \(N^\text {pre}=N^\text {post}\) |
---|---|---|---|---|---|---|
21-mer insertion | 21 | \(8.5 \times 10^6\) | 140 | Short | 100 | \(4.6 \times 10^7\) |
150-mer insertion | 150 | \(8.5 \times 10^6\) | 1000 | Short | 100 | \(4.6 \times 10^7\) |
300-mer insertion | 300 | \(8.5 \times 10^6\) | 2000 | Short | 100 | \(4.6 \times 10^7\) |
avGFP mutagenesis | 714 | \(2.5 \times 10^7\) | 4760 | Long | 100 | \(4.6 \times 10^5\) |
avGFP mutagenesis | 714 | \(2.5 \times 10^7\) | 4760 | Short | 42 | \(4.6 \times 10^7\) |
AAV recombination | 2253 | \(2.6 \times 10^{7}\) | 15,020 | Long | 100 | \(4.6 \times 10^5\) |
AAV recombination | 2253 | \(2.6 \times 10^{7}\) | 15,020 | Long | 100 | \(4.6 \times 10^4\) |
AAV recombination | 2253 | \(2.6 \times 10^{7}\) | 15,020 | Long | 100 | \(4.6 \times 10^3\) |
AAV recombination | 2253 | \(2.6 \times 10^{7}\) | 15,020 | Short | 13 | \(4.6 \times 10^7\) |
AAV recombination | 2253 | \(2.6 \times 10^{7}\) | 15,020 | Hybrid | 100 long + 13 short | \(4.6 \times 10^3\) long + \(4.5 \times 10^7\) short |