Fig. 5
From: 3D organization of regulatory elements for transcriptional regulation in Arabidopsis
The effects of distinct CREs on transcription. a Cis-regulatory elements (CREs) models. The anchor DRE model, distal CREs involved in chromatin interactions. The anchor PRE model, proximal CREs involved in chromatin interactions. The basal DRE model, distal CREs not involved in chromatin interactions. The basal PRE model, proximal CREs not involved in chromatin interactions. Solid curve, chromatin loop. b Proportion and number of active DREs (upper) and their corresponding genes (lower) involved or not involved in chromatin interactions. c Boxplots showing the expression levels of active DRE-associated nearest basal genes, nearest anchor genes, and long-range connecting genes. ***p < 0.001, **p < 0.01 from Wilcoxon test. d Proportion and number of active PREs (upper) and their corresponding genes (lower) involved or not involved in chromatin interactions. e Boxplots showing the expression levels of active PRE-associated nearest basal genes, nearest anchor genes, and long-range connecting genes. ***p < 0.001 from Wilcoxon test. f Boxplots showing the expression levels of PRE- and DRE-associated long-range connecting genes. ***p < 0.001 from Wilcoxon test