Fig. 4
From: 3D organization of regulatory elements for transcriptional regulation in Arabidopsis
Epigenomic and spatial organization identification of distinct cis-regulatory elements (CREs). a Distribution of CREs defined by ATAC-seq approach in different genomic regions. PREs, proximal cis-regulatory elements; DREs, distal cis-regulatory elements. b Chromatin states definition, composition (emission probability), genome coverage and genomic annotation enrichments, and expression levels of genes associated with each chromatin state. c Percentages of PREs and DREs with and without chromatin interactions that with distinct epigenomic properties. d Epigenome heatmaps (upper) and profiles (lower) of different clusters of anchor CREs. Regions shown are ± 2 kb (DNA methylation regions are ± 1 kb) from ATAC-seq peak summits