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Table 3 Average number of alleles per locus when all 58 HGSVC and 90 HPRC haplotypes were annotated using the original and efficient set of motifs. Annotations were grouped into one allele if their edit distance with respect to the motif composition is 0–3 motifs. Statistics calculated by excluding constant loci that have only one allele measured by 0 edit distance under the original set are shown in brackets

From: vamos: variable-number tandem repeats annotation using efficient motif sets

 

Edit distance

Motif set

0

1

2

3

Original set (\(q = 0\))

4.8 (7.8)

3.4 (5.2)

2.6 (3.8)

2.2 (3.1)

Efficient set (\(q = 0.1\))

4.1 (6.4)

2.9 (4.3)

2.3 (3.3)

2.0 (2.7)