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Table 2 Comparison between vamos and greedy method. The quality of an annotation was measured calculating the edit distance between the nucleotide sequences translated from the annotated string of motifs and the original assembled sequences. An annotation is significantly better if the corresponding edit distance is less than 80% of that of the other

From: vamos: variable-number tandem repeats annotation using efficient motif sets

 

Average number of loci per assembly

vamos < greedy

15,170

vamos <\(80\% \times\)greedy

8097

greedy < vamos

13,479

greedy <\(80\% \times\)vamos

6308