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Table 3 Benchmarking results for cow data

From: GreenHill: a de novo chromosome-level scaffolding and phasing tool using Hi-C

Assembler

Size (bp)

Max Length (bp)

N50 (bp)

QV

Switch error rate

Phasing accuracy

FALCON-Unzip + GreenHill

5,265,512,220

156,630,926

89,758,138

42.40

0.18

0.949

FALCON-Unzip + 3D-DNA

5,649,125,145

156,722,321

77,197,018

41.15

0.23

0.826

FALCON-Unzip + SALSA2

5,479,993,517

139,927,026

68,805,579

41.25

0.22

0.856

  1. Size and N50 were calculated for sequences whose length ≥ 500 bp. Size represents the size of assemblies generated by each assembler. QV and switch error rate were calculated by Merqury. Phasing accuracy represents the proportion of the majority of hap-mers in a scaffold, and a high value of this indicator suggests large-scale haplotype consistency. A bold value indicates the best one for each input assembly
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Genome Biology

ISSN: 1474-760X

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