Reference SNP ID | Genomic coordinate GRCh37 | HGVSc | HGVSp | Patient count, n | ClinVar pathogenicity | Patient-based severity | CDS activity-based severity | CDS percentage of wild-type activity, % | Overall gnomAD frequency | gnomAD population maximum frequency | gnomAD population |
---|---|---|---|---|---|---|---|---|---|---|---|
rs80338815 | chr22:51065593:C > T | c.465 + 1G > A | NA | 186 | Pathogenic | Severe | NA | NA | 6.36E − 04 | 1.21E − 03 | NFE |
rs28940893 | chr22:51063820:G > A | c.1283C > T | p.P428L | 117 | Pathogenic | Moderate | Severe | 0.037 | 4.08E − 04 | 9.47E − 04 | Other |
rs74315457 | chr22:51065404:A > C | c.542 T > G | p.I181S | 25 | Pathogenic | Mild | Mild | 4.32 | 2.26E − 04 | 4.06E − 04 | Finnish |
rs551472773 | chr22:51064624:G > A | c.937C > T | p.R313X | 18 | Pathogenic | Severe | NA | NA | 1.26E − 05 | 2.79E − 05 | NFE |
rs74315458 | chr22:51065802:C > T | c.257G > A | p.R86Q | 15 | Pathogenic | Moderate | Moderate | 2.13 | 8.09E − 05 | 2.74E − 04 | Finnish |
rs199476352 | chr22:51065803:G > A | c.256C > T | p.R86W | 14 | Conflicting interpretations of pathogenicity | Moderate | Mild | 7.86 | NA | NA | NA |
rs74315455 | chr22:51065757:C > A | c.302G > T | p.G101V | 13 | Pathogenic | Severe | Severe | 0.069 | NA | NA | NA |
rs74315459 | chr22:51064630:C > T | c.931G > A | p.G311S | 12 | Conflicting interpretations of pathogenicity | Severe | Severe | 0.28 | 2.92E − 05 | 9.94E − 05 | South Asian |
rs74315480 | chr22:51064043:G > A | c.1174C > T | p.R392W | 12 | Conflicting interpretations of pathogenicity | Severe | Severe | 0.20 | 1.63E − 05 | 6.50E − 05 | South Asian |
rs74315472 | chr22:51065046:G > A | c.827C > T | p.T276M | 12 | Pathogenic / likely pathogenic | Severe | Severe | 0.098 | 4.07E − 06 | 1.82E − 04 | Other |
rs743616 | chr22:51064039:G > C | c.1178C > G | p.T393S | 11 | Benign | Benign | Benign | 14.69 | 4.82E − 01 | 5.93E − 01 | Finnish |
rs199476360 | chr22:51064636:C > T | c.925G > A | p.E309K | 11 | Pathogenic | Severe | Severe | 1.36 | 4.14E − 06 | 5.87E − 05 | East Asian |
rs74315481 | chr22:51063872:TGGTATCAC > - | c.1223_1231delGTGATACCA | p.S408_T410del | 10 | Pathogenic / likely pathogenic | Severe | Severe | 0.23 | 8.53E − 06 | 9.50E − 06 | NFE |