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Table 1 Somatic cells data summary

From: CimpleG: finding simple CpG methylation signatures

 

Train dataset

Test dataset

Total

Adipocytes

10 (2.4%)

3 (1.8%)

13 (2.3%)

Astrocytes

1 (0.2%)

0 (0%)

1 (0.2%)

Endothelial cells

32 (7.8%)

30 (18%)

62 (11%)

Epidermal cells

3 (0.7%)

0 (0%)

3 (0.5%)

Epithelial cells

16 (3.9%)

18 (11%)

34 (5.9%)

Fibroblasts

52 (13%)

39 (24%)

91 (16%)

Glia

10 (2.4%)

7 (4.2%)

17 (3.0%)

Hepatocytes

15 (3.6%)

3 (1.8%)

18 (3.1%)

iPS cells

13 (3.2%)

3 (1.8%)

16 (2.8%)

Leukocytes

182 (44%)

33 (20%)

215 (37%)

Mesenchymal SCs

56 (14%)

12 (7.3%)

68 (12%)

Muscle cells

3 (0.7%)

0 (0%)

3 (0.5%)

Muscle SCs

0 (0%)

6 (3.6%)

6 (1.0%)

Neurons

18 (4.4%)

11 (6.7%)

29 (5.0%)

Total

411 (100%)

165 (100%)

576 (100%)

  1. The highlighted rows indicate the cell types that were used to train the classifier.
  2. The other cell types were only part of the training or test dataset for additional control