Table 1 Performance comparison of different clustering tools and datasets
Dataset | Tool | Time | SpeedUpa | Memory (GB) | NMI |
|---|---|---|---|---|---|
bact-RefSeq | MeShClust3 | >14days | - | - | - |
Gclust | - | - | OOMb | - | |
Mash &Mothur | 365m14s | 66.4 | 7.33 | 0.961 | |
clust-mst | 5m30s | - | 10.70 | 0.961 | |
clust-greedy | 5m05s | - | 4.83 | 0.959 | |
sub-Bact | MeShClust3 | 3,096m18s | 2,996.4 | 139.17 | 0.920 |
Gclust | 1,502m05s | 1,454.6 | 156.35 | 0.812 | |
Mash &Mothur | 4m37s | 4.5 | 1.19 | 0.973 | |
clust-mst | 1m02s | - | 5.77 | 0.973 | |
clust-greedy | 59s | - | 5.17 | 0.970 |