Table 1 Statistics of the three coral genome assemblies from this study compared to representative existing genomes of the same clades
From: Pervasive tandem duplications and convergent evolution shape coral genomes
| Â | Complex | Robust | |||||
|---|---|---|---|---|---|---|---|
| Â | Porites lobata | Porites evermanni | Porites lutea | Acropora millepora | Pocillopora cf. effusa | Pocillopora verrucosa | Pocillopora damicornis |
Publication | This study | This study | Robbins et al | Fuller et al | This study | Buitrago-López et al | Cunning et al |
Estimated genome size | 543Â Mb | 497Â Mb | 552Â Mba | ? | 315Â Mb | 407Â Mba | 262Â Mba |
# contigs|scaffolds | 1098 | 8186 | 2975 | 854 | 252 | 18,268 | 4393 |
Cumulative size | 646,152,978 | 603,805,388 | 552,020,673 | 475,381,253 | 347,233,126 | 380,505,698 | 234,335,492 |
N50 (L50) | 2,154,615 (84) | 171,385 (935) | 660,708 (242) | 19.8Â Mb (9) | 4,753,879 (23) | 333,696 (326) | 326,133 (198) |
Max size | 8,615,247 | 1,802,771 | 3,122,227 | 39,361,238 | 11,895,822 | 2,095,917 | 2,168,405 |
# of N’s | 0 (0%) | 40,756,223 (6.75%) | 48,123,166 (8.72%) | 37,012 (0.01%) | 0 (0%) | 510,035 (0.13%) | 8,607,682 (3.67%) |
# contigs | 1098 | 32,888 | 47,330 | 1234 | 252 | 54,131 | 53,036 |
N50 (L50) | 2,154,615 (84) | 33,681 (4,563) | 19,557 (7,534) | 1,091,365 (129) | 4,753,879 (23) | 23,429 (3,851) | 25,941 (2,282) |
Repeat coverage (% of assembly) | 51.28 | 42.26 | 42.36 | ? | 36.67 | 38.44 | 20.36 |
# number of genes | 42,872 | 40,389 | 31,126 | 28,188 | 32,095 | 27,439 | 26,077 |
Genes density (genes/Mb) | 66.4 | 66.7 | 56.4 | 59.3 | 92.5 | 72 | 111.4 |
% BUSCO (compl.; frag.; miss.) eukaryota odb10 N = 255 genes | 97.7; 1.2; 1.1 | 94.5; 3.9; 1.6 | 92.2; 4.3; 3.5 | 73.7; 16.5; 9.8 | 98.4; 0.4; 1.2 | 90.2; 5.1; 4.7 | 86.3; 9.0; 4.7 |