Fig. 6
From: Pervasive tandem duplications and convergent evolution shape coral genomes
A Approximately maximum-likelihood phylogenetic tree obtained with FastTree after aligning proteins from OG0000106 (TIR-domain-containing orthogroup) in Porites lobata (orange dots) and Pocillopora cf. effusa (red dots). Colors correspond to tandemly repeated gene clusters (singletons are in red). B,C Trees obtained for 15 coral species for two individual TDG clusters. Dot colors correspond to species displayed in the species tree in D. E Distribution of Ks between pairs of genes in TDG clusters, in P. lobata and P. cf. effusa