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Table 5 Default values of Celloscope’s parameters

From: Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data

Parameter

Default value

Step-size\(\theta\)

0.1

Step-size\(\lambda _0\)

0.05

Step-size\(p_g\)

0.1

Step-size\(N_s\)

2

(a, b,\(a_0\),\(b_0\))

(10, 1, 0.1, 1)

\(\alpha\)

\(> \frac{t_N}{t_N+1}\)

Burn-in

\(\ge 40,000\)

Number of iterations

\(\ge 50,000\)

Thinning

10

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Genome Biology

ISSN: 1474-760X

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