Fig. 4
From: A pangenome analysis pipeline provides insights into functional gene identification in rice
Population structure analysis based on PAVs and SNPs. a Haplotype landscape from PAVs and SNPs in the 7.2–9.2-Mb interval of chromosome 8 using the pangenome coordinate. b Fst calculated using PAV and SNP data in the 7.2–9.2-Mb interval of chromosome 8 using the pangenome coordinate. The red line indicates the Fst values calculated from SNPs, and the blue line indicates the Fst values calculated from PAVs. c PCA plot showing the population structure of different rice accessions which were generated by PAV and SNP data