Table 1 Identified GSH sites in blood from the 1000 Genomes project and the GTEx data
From: Genomics and epigenetics guided identification of tissue-specific genomic safe harbors
GSH_ID | Position | FDR | AF | TAD gene density | Active regions | Gene | Location | Dataset |
|---|---|---|---|---|---|---|---|---|
BLD_GSH_1 | chr1:150200138-150200139 | 0.84 | 0.14 | NA | 4_Tx,5_TxWk | ANP32E | Intron | 1KG |
BLD_GSH_2 | chr1:198243300-198243301 | 1 | 0.11 | 4.94 | 5_TxWk | NEK7 | Intron | 1KG, GTEx |
BLD_GSH_3 | chr11:129759556-129759557 | 1 | 0.25 | NA | 4_Tx,5_TxWk | NFRKB | Intron | 1KG |
BLD_GSH_4 | chr12:122722288-122722289 | 1 | 0.23 | NA | 4_Tx,5_TxWk | VPS33A | Intron | 1KG |
BLD_GSH_5 | chr13:111559414-111559652 | 0.87 | 0.2 | NA | 4_Tx,5_TxWk | ANKRD10 | Intron | 1KG |
BLD_GSH_6 | chr15:49609604-49609605 | 1 | 0.17 | 10.7 | 5_TxWk | GALK2 | Intron | 1KG, GTEx |
BLD_GSH_7 | chr15:59169388-59169389 | 0.47 | 0.16 | NA | 4_Tx,5_TxWk | - | Intergenic | 1KG |
BLD_GSH_8 | chr2:39071477-39071819 | 0.16 | 0.32 | NA | 4_Tx,5_TxWk | DHX57 | Intron | 1KG |
BLD_GSH_9 | chr2:223481690-223481979 | 0.93 | 0.28 | NA | 4_Tx,5_TxWk | FARSB | Intron | 1KG |
BLD_GSH_10 | chr3:37361602-37361603 | 1 | 0.1 | 25 | 4_Tx,5_TxWk | GOLGA4 | Intron | 1KG, GTEx |
BLD_GSH_11 | chr3:45542662-45542663 | 0.13 | 0.36 | NA | 4_Tx,5_TxWk | LARS2 | Intron | 1KG, GTEx |
BLD_GSH_12 | chr3:45768351-45768676 | 0.26 | 0.38 | NA | 4_Tx,5_TxWk | SACM1L | Intron | 1KG |
BLD_GSH_13 | chr4:88032137-88032469 | 0.76 | 0.58 | NA | 4_Tx,5_TxWk | AFF1 | Intron | 1KG, GTEx |
BLD_GSH_14 | chr6:157397700-157397701 | 1 | 0.13 | NA | 2_TssAFlnk,5_TxWk | ARID1B | Intron | 1KG, GTEx |
BLD_GSH_15 | chr8:120800792-120800793 | 0.89 | 0.21 | NA | 4_Tx,5_TxWk | TAF2 | Intron | 1KG |
BLD_GSH_16 | chr9:100675550-100675551 | n.s. | 0.16 | NA | 4_Tx,5_TxWk | TRMO | Intron | GTEx |
BLD_GSH_17 | chr9:115937084-115937379 | 0.34 | 0.35 | NA | 4_Tx,5_TxWk | FKBP15 | Intron | 1KG |
BLD_GSH_18 | chr1:1654012-1654013 | n.s. | 0.15 | NA | 5_TxWk | CDK11A | Intron | GTEx |
BLD_GSH_19 | chr15:79167169-79167170 | n.s. | 0.12 | NA | 1_TssA,2_TssAFlnk | MORF4L1 | Intron | GTEx |