Fig. 2
From: PerSVade: personalized structural variant detection in any species of interest
PerSVade’s parameter optimization improves the SV calling accuracy on simulations. We ran perSVade’s SV calling on three samples / species for six eukaryotes (see “Methods”) using either “random,” “known,” or “homologous” simulations. These plots show the F-value of either default (gray) or optimized (red) parameters (for each sample and simulation type) on these simulations. The x axis represents the type of SV (deletions (del), tandem duplications (tan), inversions (inv), insertions (ins), translocations (tra), and the average of all SVs (all)). Note that Additional file 1: Figure S3 shows the corresponding precision and recall, from which the F-value is calculated