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Fig. 4 | Genome Biology

Fig. 4

From: BASS: multi-scale and multi-sample analysis enables accurate cell type clustering and spatial domain detection in spatial transcriptomic studies

Fig. 4

Detecting spatial domains in the STARmap dataset. A An anatomic reference atlas obtained from the Allen Mouse Brain Atlas displays the spatial domains of the prelimbic area in the mouse prefrontal cortex. B Annotated spatial domain labels for the tissue section BZ5 based on spatial gene expression patterns and the Allen Mouse Brain Atlas. C Barplots of ARI show the accuracy of different methods for spatial domain detection on the tissue section BZ5. The compared methods include BASS, HMRF, BayesSpace, and SpaGCN. For HMRF, the range of ARI based on a pre-defined list of βs is shown with an error bar. D The identified spatial domains on the tissue section BZ5 are shown for BASS, HMRF, BayesSpace, and SpaGCN. E The identified spatial domains on three tissue sections (BZ5, BZ9, and BZ14) were obtained with the multi-sample analysis of BASS

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Genome Biology

ISSN: 1474-760X

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