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Fig. 2 | Genome Biology

Fig. 2

From: DeCAF: a novel method to identify cell-type specific regulatory variants and their role in cancer risk

Fig. 2

cfQTL testing methods. A Comparing eGenes from DeCAF vs standard interaction QTL (ieQTL) methods. Plot depicting the number of significant cfQTL genes (y-axis) for each cell type (x-axis) for DeCAF only (teal), standard interaction eQTL (ieQTL) only (purple), and shared (orange) tests. B Intersection of significant eGenes from cancer and cell fraction tests for xCell and TIMER deconvolutions. C Overlap of eGenes from cfQTLs, tsQTLs, and marginal eQTLs. D Overlap of significant snp:gene pairs from cfQTLs, tsQTLs, and marginal eQTLs

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Genome Biology

ISSN: 1474-760X

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