Table 2 Comparison of CLIMtools V1.0 and CLIMtools V2.0. NA, not available
Tool | V1.0 | V2.0 |
|---|---|---|
AraCLIM | • 204 environmental variables • 1131 accessions | • 473 (465 continuous and 8 categorical) environmental variables • 2999 accessions |
GenoCLIM | • 204 environmental variables •Mixed model GWAS (AMM) | • 465 environmental variables • Mixed (AMM) and linear model (LM) GWAS • RiboSNitch prediction • Indices of genetic diversity (PI), neutrality, and selection (Fst, Tajima’s D) for climate-associated variants • Integration of transcriptome × environment information for climate-associated variants |
CLIMGeno | • 204 environmental variables • Mixed model GWAS (AMM) | • 465 environmental variables • Mixed (AMM) and linear model (LM) GWAS • RiboSNitch prediction • Indices of genetic diversity (PI), neutrality, and selection (Fst, Tajima’s D) for climate-associated variants • Integration of transcriptome × environment information for climate associated variants |
T-CLIM | NA | • 465 environmental variables • Association with transcript variation in 558 Eurasian accessions with available transcriptome data |