Table 1 Runtime (in second) comparison under different settings (R version 4.0.3 (2020-10-10); Platform: x86_64-pc-linux-gnu (64-bit); CPU: E5-2670 v2 @ 2.50GHz; Memory: 67.7 GB). The result is based on one simulation run. The“elapsed” from the R command system.time() was used
From: LinDA: linear models for differential abundance analysis of microbiome compositional data
S0C0 | S0C1 | S0C2 | |||||
|---|---|---|---|---|---|---|---|
LinDA | ANCOM-BC | LinDA | ANCOM-BC | LinDA | ANCOM-BC | ||
m=500 | n=200 | 0.454 | 21.835 | 0.218 | 22.057 | 0.206 | 64.519 |
n=10,000 | 6.844 | 162.218 | 4.043 | 163.552 | 5.073 | 216.564 | |
m=5000 | n=200 | 1.598 | 184.972 | 1.607 | 162.611 | 1.615 | 599.985 |
n=10,000 | 28.253 | 5135.393 | 15.314 | 5157.148 | 15.494 | 5506.353 | |