Fig. 3
From: scINSIGHT for interpreting single-cell gene expression from biologically heterogeneous data
Comparison of observed and integrated data of CD8+ T cells from melanoma patients. A–D tSNE plots of CD8+ T cells based on the observed (unintegrated) data (A) and integrated data by scINSIGHT (B), Seurat (C), and LIGER (D). For each method, three tSNE plots colored by inferred cell cluster, NR/R condition, or donor index are displayed. E Integration scores of the observed and integrated data. F Silhouette scores of the observed and integrated data