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Table 1 Large-scale cancer data sets used for benchmarking HyperChIP. Each data set was comprised of ChIP/ATAC-seq profiles of tens of cancer patients

From: HyperChIP: identification of hypervariable signals across ChIP-seq or ATAC-seq samples

Data set

Biological context

Cohort size

Source

H3K27ac ChIP-seq

Tumor tissues of LUAD patients

36

Yuan et al. [6]

ATAC-seq

Tumor tissues of NSCLC patients

34

Wang et al. [18]

Pol II ChIP-seq

Cancer cell lines derived from LUAD patients

26

Suzuki et al. [32]

  1. LUAD Lung adenocarcinoma, NSCLC Non-small cell lung carcinoma