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Table 1 Large-scale cancer data sets used for benchmarking HyperChIP. Each data set was comprised of ChIP/ATAC-seq profiles of tens of cancer patients

From: HyperChIP: identification of hypervariable signals across ChIP-seq or ATAC-seq samples

Data set Biological context Cohort size Source
H3K27ac ChIP-seq Tumor tissues of LUAD patients 36 Yuan et al. [6]
ATAC-seq Tumor tissues of NSCLC patients 34 Wang et al. [18]
Pol II ChIP-seq Cancer cell lines derived from LUAD patients 26 Suzuki et al. [32]
  1. LUAD Lung adenocarcinoma, NSCLC Non-small cell lung carcinoma
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Genome Biology

ISSN: 1474-760X

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