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Table 1 Summary statistics of individual MIKK line assemblies

From: Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel

Line id

Number of contigs

GC (%)

Total length

Largest contig

N50

Total aligned length

Largest alignment

NA50

4-1

2,886

40.66

730,816,425

5,635,124

802,725

599,170,757

2,340,443

259,311

4-2

2,762

40.71

737,637,241

6,376,848

971,613

612,988,975

2,781,976

279,257

7-1

2,512

40.69

732,447,291

5,851,261

942,347

608,014,583

2,243,072

265,102

7-2

2,892

40.69

732,448,405

4,099,264

845,096

607,409,964

1,761,859

253,015

11-1

3,368

40.56

728,542,858

4,525,370

624,727

545,652,612

1,541,261

180,262

69-1

3,077

40.59

727,390,278

6,080,511

708,738

573,096,833

1,823,612

220,342

79-2

3,053

40.62

730,357,166

6,658,276

742,721

584,535,579

2,384,437

235,007

80-1

4,374

40.49

720,948,860

3,238,833

404,886

491,501,885

1,304,457

105,372

117-2

2,810

40.73

732,113,747

5,059,334

903,899

620,809,739

2,195,961

270,130

131-1

3,651

40.72

741,963,499

5,589,066

737,055

563,763,739

2,231,101

180,572

134-1

3,142

40.71

731,842,804

4,138,056

747,064

606,908,341

2,042,573

245,116

134-2

3,977

40.75

729,131,624

3,835,876

475,444

621,355,180

1,698,873

209,441