Fig. 4
From: Universal annotation of the human genome through integration of over a thousand epigenomic datasets
Full-stack states enrichments with conserved elements and repeat classes. A The first ten rows show the states most enriched with PhastCons elements and concurrently least enriched with RepeatMasker repeat elements, ordered by decreasing enrichments with PhastCons elements. The bottom ten rows show the states most enriched with repeat elements and concurrently least enriched with PhastCons elements, ordered by increasing enrichments with repeat elements. The columns from left to right list the state ID, the percent of the genome that each state covers, and the fold enrichments for repeat elements and PhastCons elements. B Heatmap of the state emission parameters from Fig. 2A for the subset of states highlighted in panel A. The colors are the same in Fig. 2A. C Fold enrichments of full-stack states with different repeat classes (“Methods”). Rows correspond to states and columns to different repeat classes. Only states that are most enriched with at least one repeat class are shown. Fold enrichment values that are maximal for a given repeat class are shown in dark red. Other fold enrichments greater than one are shaded light red