Table 1 Summary of genome assembly and annotation

Number of contigs

2433

401

Total size of contigs (bp)

2,393,894,742

2,399,649,694

Longest contig

34,251,876

56,639,188

Contig N50 count

196

50

Contig N50 length (bp)

2,927,039

14,296,645

Contig N90 count

1044

177

Contig N90 length (bp)

442,494

3,844,418

GC content

37.49

37.57

Number of protein-coding genes

29,897

28,111

Mean transcript length (bp)

1698

1709

Mean exon length (bp)

272

272

Mean exon per mRNA

6.23

6.27

Total repetitive sequences size (% of genome)

2,000,576,416 (83.55%)

2,015,579,366 (84.00%)