Fig. 1

Overview of the scRNA-tools database. A Line plot of the number of tools in the scRNA-tools database over time. The development of tools for analyzing scRNA-seq data has continued to accelerate with more than 1000 tools currently recorded. B Publication status of tools in the scRNA-tools database. Around 70% of tools have at least one peer-reviewed publication while more than 20% have an associated preprint. C Bar charts showing the distribution of platforms, software licenses, and software repositories for tools in the scRNA-tools database. Colors indicate proportions of tools using R or Python. D Bar chart showing the proportion of tools in the database assigned to each analysis category. Categories are grouped by broad phases of a standard scRNA-seq analysis workflow