Fig. 4

No. of strains resolved by STRONG, DESMAN and mixtureS algorithms in the synthetic community data sets. For MAGs with two or more strains we mapped haplotypes to the references and assigned each predicted haplotype to its best matching reference. The best such match was denoted ‘Found’. If multiple haplotypes matched to the same reference all but the best matching were denoted as ‘Repeated’. If a reference had no predicted haplotypes matched to it, it was denoted as ‘Not found’. The bars give the total numbers in each category summed over MAGs for the three methods (DESMAN, STRONG and mixtureS) and the panels results for the four different data sets with increasing number of samples (Synth_S03, Synth_S05, Synth_S10 and Synth_S15)