Fig. 3

Manhattan plots and linkage disequilibrium (LD) for loci associated with budburst stage (BB). a Two Manhattan plots showing significant association (red dots) with BB using CMLM and BLINK in the whole Swedish breeding population, and b LD between single nucleotide polymorphisms (SNPs) associated with BB in CMLM and BLINK. Blue and red horizontal lines indicate a threshold of log₁₀(1e⁻⁰⁵) and log₁₀(1e⁻⁰⁷), respectively