Table 1 Average run-time across all contrasts. Gene sets used are Broad MSigDB gene sets from the ChAMP package. All methods were run on a Blade Server: 24 CPUs - Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz
From: Gene set enrichment analysis for genome-wide DNA methylation data
| Method | Time (minutes) | ||
|---|---|---|---|
| 1 core | 10 cores | 20 cores | |
| mRRA (ORA) | 0.13 | - | - |
| GOmeth | 0.54 | - | - |
| mRRA (GSEA) | 3.04 | - | - |
| mGLM | 47.95 | 16.12 | 9.86 |
| ebGSEA | 50.12 | 36.07 | 33.79 |