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Table 1 Average run-time across all contrasts. Gene sets used are Broad MSigDB gene sets from the ChAMP package. All methods were run on a Blade Server: 24 CPUs - Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz

From: Gene set enrichment analysis for genome-wide DNA methylation data

Method Time (minutes)
1 core 10 cores 20 cores
mRRA (ORA) 0.13 - -
GOmeth 0.54 - -
mRRA (GSEA) 3.04 - -
mGLM 47.95 16.12 9.86
ebGSEA 50.12 36.07 33.79