Fig. 10

Automatically cleaned predicted haplotypes for the Brettanomyces bruxellensis strain. This figure represents an automatically cleaned version of Fig. 6. We note the presence of significantly fewer haplotigs, a higher contiguity, and the filling of the gap observed in the chromosome DEBR0S4. One notable change observed with the cleaned step is that chromosome 8 is predicted to have only two different haplotypes, which was not evident based on the raw results. For any sensitive application, it would be necessary to further scrutinize this prediction since the automated cleaning process is less rigorously validated