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Table 1 Different metrics for SNV calls using Clair and Clair + SNVoter

From: Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase

Tool Sample QT All TP TP FP Acc Pre Rec F1
C Colo829BL 725 3,638,416 2,664,923 774,123 0.88 0.77 0.79 0.78
C+S Colo829BL 160 3,638,416 2,851,683 336,594 0.93 0.89 0.84 0.87
C NA19240 Run0 755 3,973,249 2,997,917 1,462,313 0.86 0.67 0.81 0.74
C+S NA19240 Run0 170 3,973,249 3,160,297 956,846 0.90 0.77 0.86 0.81
C NA19240 Run1 780 3,973,249 3,465,350 990,793 0.84 0.78 0.92 0.84
C+S NA19240 Run1 350 3,973,249 3,436,275 658,067 0.88 0.84 0.91 0.87
C NA19240 runs 1&2 800 3,973,249 3,644,703 812,335 0.84 0.82 0.96 0.88
C+S NA19240 runs 1&2 180 3,973,249 3,595,674 683,727 0.86 0.84 0.94 0.89
C NA19240 runs 0&1 820 3,973,249 3,639,922 750,137 0.85 0.83 0.95 0.89
C+S NA19240 runs 0&1 170 3,973,249 3,592,467 653,594 0.85 0.85 0.94 0.89
  1. C Clair, S SNVoter, QT quality threshold, TP true positive, FP false positive, Acc accuracy, Pre precision, Rec recall. All TP refers to all high-quality SNVs from 1KGP for NA19240 and from Strelka for Colo829BL Illumina sequencing