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Table 2 Q scores and numbers of mismatch, insertion, and deletion errors of E. anophelis SUE in the isolate dataset

From: Homopolish: a method for the removal of systematic errors in nanopore sequencing by homologous polishing

Methods Avg. Q score Median Q score Mismatches Insertions Deletions
Flye 22.25 22.2 1363 18718 5039
Racon 4x 23.57 23.57 1163 6097 11215
Racon 4x + Medaka 26.43 26.48 566 1114 7891
Racon 4x + Hompolish 33.11 33.57 1224 384 443
MarginPolish 25.57 25.61 389 1055 10198
MarginPolish + HELEN 23.89 23.91 669 4614 11753
MarginPolish + Homopolish 35.8 37.21 447 222 435
Racon 4x + Medaka + Homopolish 35.32 36.38 611 216 407
MarginPolish + HELEN + Homopolish 33.57 34.44 723 342 774